Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02025 ATGGAGTTGGCTTTGAGCTTAGGCCACACAAACAACGCTTCAATGGGGTTTTCCGTGGCACTGTCTCACGACACAAGAGCTTCCTCAGATCCACCCCTTCAGCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGGATGGAAGACACACCGGTGAGGGCGCTTGATGACACGGACGACGGTGCTGCAGTTTCGTCCCCCAACAACAGTGCAGTGTCGTCTTTTTGCAGAAACAGTAGAAAGTTTTTTGAGGGTGACAGCGAAGAAGACGAAAACGGGTCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTAGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAGAAACTCGTTCTTGCAAAAGAGTTAAATCTGCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAGTCTGTCAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCATGCAACTTCCAGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCGCCGCTGCTTCCGCCACCAACAATGATCGTGTTTCTCTGAACAAGCCCAGAATATTGTCAGGCCCACACGCAGCAGGCCTACATGGCCCATCGGAGTGTTTCTTCTGA 792 0.4987 MELALSLGHTNNASMGFSVALSHDTRASSDPPLQLHHLLPSTPVLPSPRLPIPWLSHALGMEDTPVRALDDTDDGAAVSSPNNSAVSSFCRNSRKFFEGDSEEDENGSTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELRALKTCEPFFMQLPATTLTMCPSCERVATTTSAAASATNNDRVSLNKPRILSGPHAAGLHGPSECFF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02025 263 CDD homeodomain 110 167 IPR001356 GO:0003677
Vian2g02025 263 SMART HOX_1 108 170 IPR001356 GO:0003677
Vian2g02025 263 SUPERFAMILY Homeodomain-like 104 167 IPR009057 -
Vian2g02025 263 Gene3D - 114 164 - -
Vian2g02025 263 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Vian2g02025 263 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Vian2g02025 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 21 236 - -
Vian2g02025 263 CDD bZIP 159 198 - -
Vian2g02025 263 Pfam Homeodomain 110 164 IPR001356 GO:0003677
Vian2g02025 263 Pfam Homeobox associated leucine zipper 166 200 IPR003106 GO:0006355|GO:0043565
Vian2g02025 263 Coils Coil 172 199 - -
Vian2g02025 263 SMART halz 166 209 IPR003106 GO:0006355|GO:0043565
Vian2g02025 263 FunFam Homeobox-leucine zipper protein HAT22 114 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02025 Vian-Chr2 39926596 39927639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02025 100 253 Homeobox Transcription Factor Family AT4G37790 62.805 4.90e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g02025 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02025 K09338 - gmx:100810885 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02025 2 39926596 39927639 Vian2g02025 2 39926596 39927639 ECH
Vian2g02025 2 39926596 39927639 Vian3g02542 3 39594410 39595983 PCT