Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02024 ATGGAGGAAGAGTCCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCGGGCCCAGAGCCTGAAACTGGCCCCATAAGCAATGAAGCTGTGAACTTGGATGATTGGATAGGAGAGCCTCTTCAGAGAATCAGCGAAGCTGTGAGGTTTAGGGCACGGCAACGGTGGCGATGGCGGCATGTTCCGCTACCGCATCCTGAACTTCATGTCCACATCCCACCTGAAGCTGCGCGGCATTTTCATATACCTCCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACTGCCTTACAGGCTGGAGAAGGCAGTGTGGCGGCCGAAGAGAGAGTGGAGGAGGTGCCGAAGGCGTGTGAGAATGTGAATGGTATTGCAGAGGACGAGGCTTCGCAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTCTCTAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCAGATGCGAGAGAGTGTCCAGTTTGCAAGGGAGAGGTCACTCTCAAAGGTGTTACCCCAATATATGGCCGAGGGAACACTGTCCGAGGTCACGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTACAGTCCCTGTGGAAGAGATGATTCGGCGTATCGGGAGTAGAATTGATCTTAGTCGTGATTTTGTTCAGCCACATGAAGGGGAGGGTGCCCGTGAAACTGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATTCGGAGAGAGCAGAATTTAGGACCACTCCCTGAGGATGTGATGGCTTTTGCTCAGAATAATGCTACTAATAATACTGCTGAGGCAGGGGATAACCGAAATAGGGTGCAACAATCTCATATGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTATTTCAGCACTCACTTCTGCTGAAAGGTTACTGGAGGCTTATTTCCGTAGCAGTGCAATTGTTAGGAACCAAGAACAACCTTCACCTCCAGTTGATGACAGGGATTCTTTTTCAAGCATTGGCGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTGGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGACGTGGATAGTGGAGATTCTCGTGCTCCAAGACGCAGACGTTTGAACTGA 1335 0.4854 MEEESSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRFRARQRWRWRHVPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERVEEVPKACENVNGIAEDEASQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDARECPVCKGEVTLKGVTPIYGRGNTVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFTVPVEEMIRRIGSRIDLSRDFVQPHEGEGARETAERTTSLLSRFLTARGIRREQNLGPLPEDVMAFAQNNATNNTAEAGDNRNRVQQSHMLRRTQSHRATLSTISALTSAERLLEAYFRSSAIVRNQEQPSPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02024 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 251 IPR013083 -
Vian2g02024 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 133 341 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vian2g02024 444 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Vian2g02024 444 MobiDBLite consensus disorder prediction 422 444 - -
Vian2g02024 444 SUPERFAMILY RING/U-box 152 211 - -
Vian2g02024 444 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Vian2g02024 444 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Vian2g02024 444 CDD RING-HC_AtRMA-like 155 198 - -
Vian2g02024 444 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Vian2g02024 444 SMART ring_2 157 197 IPR001841 -
Vian2g02024 444 MobiDBLite consensus disorder prediction 411 444 - -
Vian2g02024 444 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02024 Vian-Chr2 39899097 39900431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02024 1 435 C3H Transcription Factor Family AT3G58030 52.349 2.99e-135 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02024 K10666 - gmx:100811099 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02024 2 39899097 39900431 Vian2g02024 2 39899097 39900431 ECH