Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02005 ATGGATACTCGCAAGAGGGGAAGGCTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAGCAAGAAATGGAGTCCTTGTCAACTGGTGTAGGAAGCAAATCAAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCGTTTGGTGAGAGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTGGCAGCTCTGCCACCTGTACCAAATGGGTCTGCGCCACCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGACCATCGAGCGTTGGGGCCGACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATAAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTTTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTTCCGAATTGCGTAAATCAGTATGA 885 0.4667 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGASELRKSV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02005 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 153 IPR045877 GO:0003729
Vian2g02005 294 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Vian2g02005 294 SMART kh_6 167 237 IPR004087 GO:0003676
Vian2g02005 294 FunFam Zinc finger CCCH domain-containing protein 257 292 - -
Vian2g02005 294 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Vian2g02005 294 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Vian2g02005 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vian2g02005 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vian2g02005 294 Gene3D - 260 293 - -
Vian2g02005 294 Gene3D - 94 131 - -
Vian2g02005 294 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Vian2g02005 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vian2g02005 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vian2g02005 294 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Vian2g02005 294 MobiDBLite consensus disorder prediction 1 26 - -
Vian2g02005 294 Pfam KH domain 171 233 IPR004088 GO:0003723
Vian2g02005 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Vian2g02005 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Vian2g02005 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Vian2g02005 294 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Vian2g02005 294 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Vian2g02005 294 CDD KH-I_AtC3H36_like 171 236 - -
Vian2g02005 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Vian2g02005 294 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02005 Vian-Chr2 39698287 39700648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian2g02005 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02005 - - gmx:100803981 547.354