Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02001 ATGTATCAGTGTAGTTCCCAAATGTACGGAACTGATTGGGAATACATGGGGATTAGCAACCTAGCCAAGGTTGTTGGATCAGACCAAATTCTTGAGCCAAAAAGCTCACCTTTCAACATTGTCACCACTCCTCTTCAAATTCAAACCCCACAAGGCTTTTGTGCAACTGCAACAAAAGGGCTTGTGAGTTTTCAAGCTCAACAACATGCTCATCATCAGCATCAGATCGAAGTTCCTGCTTGGTGCTTTGACTCTAACATGCTGAATATTTGCCAAGCCTCTGGGGATAACTTTACCACCAAACAAGATCCACCCTCGTCTCAATTCACAAGCTCCTTGTGCCCGGTTGCTGAATCTTTCTTGTCGTCCAGCACTGGTGCAGATTGTCCTTCTTCTTCTGAAAAATATTGTAAAATTACTTCCTATTCTGAAAAACATAGCAGCATGCAGCCTGATGGTATGCCATATTACGATCACTTTTCCCAAGAAGAAGATAAATTACTCAGAGATGATGCTGCCACGGATGAAAGGCCCCTTGAAATTTCCTTTCAGAGAAACCAGTTGGAATCATGTACAAAGCCACAAAAGCAAGCTCCTCATAGACTTTGTGGGGTTGCCTGTGTAACTTCTAGCAACTCTGCTTCTAGAAGAGGCAAAAGAAGAATAAAATGGACCGACGATCTACACGAGCCATTTATGATGATTGTTAACAGTCTTGGTGGTCCAGAAAAGGCAAAACCTAAGGCTATACTAGATATGATGAAATCAGATTTGCTGTCCATTTCTCATGTTAAAAGTCACTTACAGAAGTGTAGGTCTACAATAAACATGCACAAAGCTTTGCAGGGTAAATTACTTCTGTCATTGCCATGGTGTTATATTACCGTAATGCATATACCTTCTGAAATTCCTCAAAACATCTTTCTTTTGAACTGTACCATTGAAAAATCCGAGGAAGGACAGAGAATGGATGGGGTGGCTGAGCTTCAAGTGAAAATCCACATGCAAATTGAGGAATCAAGGCAACTGCAACTAGAGGTTCGGAGGAATATCTGCCAACAACTAGAGATGCAACGAAATCTCCAAATGCTAATTCAACAGCAGAGCCAGCAACTCAAAGTAATGTTTGATTACCAAAAGAAAAAACCCAAACTGGACACAGAACTCGAAGCAACTGTCCCCTAA 1185 0.4143 MYQCSSQMYGTDWEYMGISNLAKVVGSDQILEPKSSPFNIVTTPLQIQTPQGFCATATKGLVSFQAQQHAHHQHQIEVPAWCFDSNMLNICQASGDNFTTKQDPPSSQFTSSLCPVAESFLSSSTGADCPSSSEKYCKITSYSEKHSSMQPDGMPYYDHFSQEEDKLLRDDAATDERPLEISFQRNQLESCTKPQKQAPHRLCGVACVTSSNSASRRGKRRIKWTDDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQKCRSTINMHKALQGKLLLSLPWCYITVMHIPSEIPQNIFLLNCTIEKSEEGQRMDGVAELQVKIHMQIEESRQLQLEVRRNICQQLEMQRNLQMLIQQQSQQLKVMFDYQKKKPKLDTELEATVP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02001 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 210 381 IPR044848 GO:0003700
Vian2g02001 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 219 273 IPR006447 GO:0003677
Vian2g02001 394 Gene3D - 218 275 - -
Vian2g02001 394 SUPERFAMILY Homeodomain-like 218 275 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02001 Vian-Chr2 39655126 39657343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02001 207 379 G2-like Transcription Factor Family AT4G28610 37.430 2.58e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian2g02001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02001 - - var:108322231 596.66