Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02000 ATGGAAGATTTGAAGAAGAGAAAACTGGACGAAGCAGGAAACGGTGATTTTGCCTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTTGCAAAACCCCAGCTTGTTGATCTTCTAGCTAAATTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCTGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCAATTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAGGTAACAGGGAAGTCCCGTGGCTATGGATTTATTACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCTCCTGATGTTTCCCTGAGGAAGCTTTATATAGGAAGCTTATCACCAGAAGTCACAAGTGAACTGCTGCTCAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATACGACAGGGATACAAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCAGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGACTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCCAACAAAGGAAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTGGCTTACCTATGACCACAGGCTATATGCAGCCTGGTAAAGCTCATGTAAGCTCTGGCCACCCTATAAATTACAATTACCCCCAAACTGTTGTACCGTATTCCGCATCTCCTTATCCAAACCCTCACATTGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCTCTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACCCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1011 0.4352 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTNSETLRAAFEEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDVSLRKLYIGSLSPEVTSELLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIIVKYADSNKGKTGQPPFPSGVVPMAGLPMTTGYMQPGKAHVSSGHPINYNYPQTVVPYSASPYPNPHIVPSPYPTQGQIPYPPLSAKKDQHGFPPTQPVGMNNYPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02000 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Vian2g02000 336 FunFam UBP1-associated protein 2C 142 240 - -
Vian2g02000 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Vian2g02000 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Vian2g02000 336 MobiDBLite consensus disorder prediction 292 323 - -
Vian2g02000 336 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Vian2g02000 336 PANTHER GEO13361P1-RELATED 47 142 - -
Vian2g02000 336 CDD RRM2_NsCP33_like 156 230 - -
Vian2g02000 336 SUPERFAMILY RNA-binding domain, RBD 149 247 IPR035979 GO:0003676
Vian2g02000 336 Gene3D - 55 142 IPR012677 -
Vian2g02000 336 Gene3D - 143 240 IPR012677 -
Vian2g02000 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Vian2g02000 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Vian2g02000 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02000 Vian-Chr2 39648169 39652247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02000 147 239 C2H2 Transcription Factor Family AT2G19380 34.409 1.97e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02000 K12741 - gmx:100776344 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02000 2 39648169 39652247 Vian2g02000 2 39648169 39652247 ECH