Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01999 ATGTTCCCCTTTCGAAAACTCCACGCTCAGTGCTCCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGACTTCAGAGCACGAAATCCGCTACCAAATTCGCCGGAAAAGCCACCCTAAAAGAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTTAACTTCTTAGACGCCGACAACATGTGCAGAAACTCGCCCTCCTTCATCCAGGATCTCCTCGCCAAAACCCACTCGCACACGCCGCACGTGAATACCAAGCGCTCCATCTCACGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGTGCGGGTCTCTCCCCTTCCGAGTACGCGCCCCTTCTCCCGTCTCATATGATTTACCTAAACGACGACGTTGTGCTCATGGAGAATCACAAGGCTCTCTGCAACTTCGGGGTACCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGCACCTCAGGTTTTTCGGTATAAACCCGGGATCTTGATCTCGAAGCTTCAGGAATACGAAAACCTCGGTGTTTCGCGGAAGACTTTGATCAATGTGGTTGCTTCCAACCCCTGTATTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTTTCGAAATGTTGAAGAGTGTTATTGGAAAGGATTGTGATTGGATTGGAGAACATTTGTTGATTAACAAGGGTTGTTGTAATTGGAGGGTGATGTTTCATGTTTTGACTTTGCTTTCTAGGGTTTTCAACGAGAAACAATTGGGTGATTTAATCACCAGTAGCCCTGGATTGATTTTTGAGGAATCTGGAGGTTGTGCGTTATCCTTGATTGGCTTTTTGTTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCACGAGTTTCCGGAAATTCGGATTGTGAAATTTTTGTCCAATTTAAGATTGTGTTTTCTGTTCTTGACAGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGTTCCTTCACTATAAAGAGAACGATTACTTTACTTACTAACTTGAATGTTGGAAAGAAGCGACTATGTAAAGTTGTGAAGGATGATCCTCTGGTAATGAAGAGTTGGGCTTTGGGAAGGAGGATTGAGCCTCTGGTTAACTCTTATTTGGAGTGTGAATCCAAGGCGCTGAAGAAGGAGTTCATGCTGAGCTTGGGGTACGAAGAGAACTCCAAAGCAATGAATGAGTCGATTAAGTTGTTCAGGGGTAGGGGAGCTGAGCTCCAGGAGAGACTTGACTTTATTGTTAATGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGAGTCCCCGCGGATTCTTAGTCAGACCACGGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATGCAATGTCGGATTTGGCTAGTTTTCCTTCCTTCCTTTCGTATTCGGCTCAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAAAGCATGGAGCTGCAGAAGCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGATAAAGCGTTTGAGAAGATGTACGTAAATCGCCATCCCTCTGGCCTTCAAGTTTGGCGGGATTTAAAGGCACAAATTTCTTCTATGGCTTAG 1659 0.4569 MFPFRKLHAQCSFFLLKPCQNPRLQSTKSATKFAGKATLKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFIQDLLAKTHSHTPHVNTKRSISRYLRYHPINEFEPFFESAGLSPSEYAPLLPSHMIYLNDDVVLMENHKALCNFGVPRTKMGRVFKLAPQVFRYKPGILISKLQEYENLGVSRKTLINVVASNPCILVGGVDFDFVKVFEMLKSVIGKDCDWIGEHLLINKGCCNWRVMFHVLTLLSRVFNEKQLGDLITSSPGLIFEESGGCALSLIGFLLKFGLSVNRVCVMLHEFPEIRIVKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTIKRTITLLTNLNVGKKRLCKVVKDDPLVMKSWALGRRIEPLVNSYLECESKALKKEFMLSLGYEENSKAMNESIKLFRGRGAELQERLDFIVNAGLDYEVVCKMIRESPRILSQTTDRINMKIESLVNEGYAMSDLASFPSFLSYSAQRVKLRFSMYNWLKKHGAAEAGLALSTIIACSDKAFEKMYVNRHPSGLQVWRDLKAQISSMA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01999 552 FunFam Transcription termination factor MTEF18, mitochondrial 278 544 - -
Vian2g01999 552 PANTHER CGI-12 PROTEIN-RELATED 243 534 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 Pfam mTERF 424 527 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 Pfam mTERF 248 383 IPR003690 GO:0003690|GO:0006355
Vian2g01999 552 Gene3D Transcription termination factor 3, mitochondrial 275 544 IPR038538 -
Vian2g01999 552 Gene3D Transcription termination factor 3, mitochondrial 67 239 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01999 Vian-Chr2 39642886 39644544 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian2g01999 mTERF 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01999 - - gmx:100807690 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01999 2 39642886 39644544 Vian2g01999 2 39642886 39644544 ECH