Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01997 ATGGGTTCAGACGCTGCTGCCACAAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACACCAGCCACTTCTCTTACTTCTGCTGCTGCTGCTGCTGGTGTTACTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTGGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGGGGCAACTTTCTGATGGAATTGACTTCATATCCTAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAACTCAGAGACACCATCTGACATTTTCTTGCAGGGTTCGGTTGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACACAGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAATATGATAAATTTCAACGGGACACCCATGACACAACTTACTGCTTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGAATGGCCAGCTCCATGGTGAGTTAGATCTGTCTCAACAGGGAAGGAGGCATTTCATGGATCTAGAACAGTCCAGGGAATATGAATCTGCTCATTGGTCACTTTAA 1095 0.4767 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAAAAGVTSSSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELTSYPKLSLRNSLPTPRSSELAPGSQTSTLSWHGNSETPSDIFLQGSVGGTSFAGPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLTASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLNGQLHGELDLSQQGRRHFMDLEQSREYESAHWSL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01997 364 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Vian2g01997 364 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Vian2g01997 364 MobiDBLite consensus disorder prediction 47 73 - -
Vian2g01997 364 Pfam SBP domain 75 148 IPR004333 GO:0003677
Vian2g01997 364 MobiDBLite consensus disorder prediction 47 65 - -
Vian2g01997 364 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
Vian2g01997 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 326 IPR044817 GO:0003677
Vian2g01997 364 MobiDBLite consensus disorder prediction 189 215 - -
Vian2g01997 364 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01997 Vian-Chr2 39617216 39620625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01997 19 364 SBP-box Gene Family AT2G42200 44.920 5.74e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian2g01997 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01997 - - gmx:100807165 635.18