Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01994 ATGGGTCCCCAAAGCAACCTTCTATCTCTTTTGGTTGCTCTGGCCGCAGTTTTTTCATCTTTGTATCTCATAAATCCAATTCCACAGTATCTCATAAAGGCCTTGTCACCTTCATCTGCATACTTGGGAAAACCTTTATCAGGGAACTTCCAAAAACATCACAAGAAACACCCTGATAGTGGGAACACCGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATAACACTTCGTATCTCTGTGTTGATCGAAAAGGGTGCTGTAATTTCACTACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTATGGTGCCAAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTACACTTCAACTGCAATTGCATGGAATGACACTGCATTATCCGCGAACGGAACGTTTTACAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGAGCTGTAGGGGCACAAGCAGTAGCCATTAGAGTATCTGGAGATCAATCTGAATTTAAGGGCTGTGGATTCTTTGGAGCACAGGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTTTACGTGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCGGTGGGACAAAGGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCTGAAGGTTGGAATGATTTCAACGACCCTTCTAGAGACCAGTGA 1011 0.4263 MGPQSNLLSLLVALAAVFSSLYLINPIPQYLIKALSPSSAYLGKPLSGNFQKHHKKHPDSGNTDSICDDFPPGIPPPNTNNTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYVNCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPSRDQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01994 336 SUPERFAMILY Pectin lyase-like 84 332 IPR011050 -
Vian2g01994 336 FunFam Pectinesterase 79 336 - -
Vian2g01994 336 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Vian2g01994 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 335 - -
Vian2g01994 336 Pfam Pectinesterase 87 331 IPR000070 GO:0030599|GO:0042545
Vian2g01994 336 Gene3D - 79 336 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01994 Vian-Chr2 39590840 39592326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01994 56 335 Carbohydrate Esterase AT1G05310 72.857 9.20e-159 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01994 - - gmx:100806629 612.068