Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01990 ATGGCTTCCAAGACCACCAACCTAACAACAAATAATCAATTGGAACCACTTCCACCACCTCAGTACCGTCACCCTCATCCTCATCATTATCAGTTACAACAACACCAACCCCAAAACCATCAAGTTCATGACCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCGTCTTCTTCTATCCCTGGAAACTACCTCAGAGGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACATTCTCTTTGTTGGGTCACACCAAAAGCATGTTTGGCTGATTCCTATCTGCAGCAGCTTCGTACTTCCTTTGACCAAATCCTTGCAGAGAAGGGAGGGGCAGAAGATGGAGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTTCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTTGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAAGAACACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCCTAGTGGCCAAAACAGACGTGTTTCATCTGGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATCGGAGGATTCAAGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAACAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTCGAGGCTCTCAATCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCCACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAACTCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTGGCGATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGTGTTGAATAG 1479 0.4713 MASKTTNLTTNNQLEPLPPPQYRHPHPHHYQLQQHQPQNHQVHDHQISFGMMQSSSSSSSIPGNYLRGKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRHSLCWVTPKACLADSYLQQLRTSFDQILAEKGGAEDGANIELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGSLLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01990 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Vian2g01990 492 MobiDBLite consensus disorder prediction 1 17 - -
Vian2g01990 492 Pfam bZIP transcription factor 201 236 IPR004827 GO:0003700|GO:0006355
Vian2g01990 492 MobiDBLite consensus disorder prediction 141 155 - -
Vian2g01990 492 MobiDBLite consensus disorder prediction 138 204 - -
Vian2g01990 492 Pfam Seed dormancy control 292 366 IPR025422 GO:0006351|GO:0043565
Vian2g01990 492 SUPERFAMILY Leucine zipper domain 201 243 IPR046347 GO:0003700|GO:0006355
Vian2g01990 492 FunFam BZIP family transcription factor 200 249 - -
Vian2g01990 492 PANTHER TRANSCRIPTION FACTOR TGA9 162 490 - -
Vian2g01990 492 CDD bZIP_HBP1b-like 201 250 - -
Vian2g01990 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 243 IPR004827 GO:0003700|GO:0006355
Vian2g01990 492 SMART brlzneu 197 270 IPR004827 GO:0003700|GO:0006355
Vian2g01990 492 Gene3D - 200 250 - -
Vian2g01990 492 Coils Coil 220 247 - -
Vian2g01990 492 MobiDBLite consensus disorder prediction 1 28 - -
Vian2g01990 492 ProSiteProfiles DOG1 domain profile. 274 488 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01990 Vian-Chr2 39507567 39513569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01990 63 490 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.192 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian2g01990 DOG1 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01990 K14431 - gmx:100815176 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01990 2 39507567 39513569 Vian3g02509 3 39050744 39055964 PCT