Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01988 ATGGCATACGCTGCGATGAAACCCACCAAGCCCGGCTTGGAGGAATCTCAGGAACAGATTCACAAGATAAGGATCACCCTATCTTCCAAGCACGTCAAAAATCTCGAGAAGGTTTGTTCGGACTTGGTTCGCGGTGCAAAGGACAAGCGCCTCAGGGTCAAGGGACCAGTTAGGATGCCAACTAAGGTTCTTCACATCACTACAAGGAAATCCCCTTGCGGTGAAGGTGCATTCCTTGAGATCTTGGACTTCTCAACCCTTCTGCGTTTGGATGATGGAGGATAA 285 0.4947 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGAFLEILDFSTLLRLDDGG 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01988 94 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian2g01988 94 Gene3D Ribosomal protein S10 domain 3 79 IPR036838 -
Vian2g01988 94 SUPERFAMILY Ribosomal protein S10 22 80 IPR036838 -
Vian2g01988 94 SMART Ribosomal_S10_2 24 93 IPR027486 -
Vian2g01988 94 Pfam Ribosomal protein S10p/S20e 24 75 IPR027486 -
Vian2g01988 94 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 75 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vian2g01988 94 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vian2g01988 94 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01988 Vian-Chr2 39496765 39497434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01988 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 85.714 3.60e-43 135