Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01983 ATGGATTCCAATTCCCGTTACCAAGTTCAGCAACAACACCAACCCAATTCCGGTTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTCTCCAACTTCAAACAAGGCGAAGCTTCTTCCATCAACGCCAACCCCTGGGAGGGTTCTGAACCACTTTTAAGATTCTTCAATTCCGGCGACACCCTCGATACGACATCCCCTACCATACGAGAATTCGTAGATAACAAGGATTCTAACGAGAATAAACAACCGAAGGAGTCAACAATATCGTCGTCGTCCCCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTCGGTACCCGAGGCATGACTCGACAGTAACTGTTTCTTCATCTATGATGGTGGGTTCTGTGGGAATGGATCAGGGTGGCAAAAGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAGCATCTCCTTTCACAACGGGTACGATGGTATGAGAGGTGTTGAAAACTTTGGTGGTGTTAACGGCAGTGATGGTGAGCATAGAATATCTATGAACAGAATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCTTCTTTGGGAATTTTATCACCAACCTCTAAAATGGGCACGGAGGGTCTTAGGGTAACTAGCCCCGAGGATGGTAGACATGGAGGTAGCAATGGTGACGCTCGATATTACGGCCCTGGATTCCCTTATACTTCTTGGAATGAGACGTCGAACCCCAAAAGACAGCGAAATAGTAATGATGAATTACTTTCTGAAGCTCAGAATGGAGACCTGGGAAATCAAGTTCATTCTCTTTCGTATCATTTGAGTTTGCCGAGAGCATCCTCGGAGATGTTTGCTATGGACAACTTGCTTCAGTTTAACGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACAGCAGAGATGTTGGATTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGAATCTGAGCGAAAGACGAGCTAAATGCAAATGTATAAACATGCAGAAACCAGAAACAGATAAAATTGCTTGA 1197 0.4411 MDSNSRYQVQQQHQPNSGLLRFRSAPTQVLSNFKQGEASSINANPWEGSEPLLRFFNSGDTLDTTSPTIREFVDNKDSNENKQPKESTISSSSPSLSPLSRMNSQQGYSTSVLPSRYPRHDSTVTVSSSMMVGSVGMDQGGKSFNPNLLRQSSFPSGNFSNSISFHNGYDGMRGVENFGGVNGSDGEHRISMNRMKNHISFSPRSPSSLGILSPTSKMGTEGLRVTSPEDGRHGGSNGDARYYGPGFPYTSWNETSNPKRQRNSNDELLSEAQNGDLGNQVHSLSYHLSLPRASSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKNLSERRAKCKCINMQKPETDKIA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01983 398 MobiDBLite consensus disorder prediction 84 121 - -
Vian2g01983 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Vian2g01983 398 MobiDBLite consensus disorder prediction 58 72 - -
Vian2g01983 398 Coils Coil 360 387 - -
Vian2g01983 398 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Vian2g01983 398 MobiDBLite consensus disorder prediction 57 121 - -
Vian2g01983 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 391 - -
Vian2g01983 398 CDD bHLH_AtbHLH_like 325 378 IPR045239 -
Vian2g01983 398 FunFam Transcription factor bHLH130 family 321 390 - -
Vian2g01983 398 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g01983 398 Coils Coil 333 353 - -
Vian2g01983 398 MobiDBLite consensus disorder prediction 199 220 - -
Vian2g01983 398 Gene3D - 322 392 IPR036638 GO:0046983
Vian2g01983 398 SMART finulus 326 376 IPR011598 GO:0046983
Vian2g01983 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 387 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01983 Vian-Chr2 39448992 39451467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01983 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.832 4.23e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g01983 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01983 - - gmx:100814652 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01983 2 39448992 39451467 Vian2g01983 2 39448992 39451467 ECH
Vian2g01983 2 39448992 39451467 Vian3g00021 3 171042 173069 ECH
Vian2g01983 2 39448992 39451467 Vian3g02504 3 38997240 38999873 PCT