Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01979 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGAAGGCGCTACACTTGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCACCGGCGCCGGAAAATGCCAGCTCATTCACTGCTCTACTTGAGCTTCCGCCAACCCAGGCGGTGGAGCTCCTTCACTCACCCAACTCTGATGGAGCTCGGAAGCCACCTAATTGCCACGTCAGCACTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCTTTAATTGAACGCGCAGCCAAGTTTTCCGTGTTTGCTGGTGAAAACTCAACGTCGCCGGGGGAGGCATGTCTGCTTCGGGCCGGGTCAGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGTGTTTCGGATCCTGTTGTTGAGAACAAGAACAAGAAGACGACCGCGAAGAGAAAGGAGCGAGAGAAGAAAGTAACGGTTAGAGGATCCTTGAAGAAGAGTAAGAGCGTCGCTGATGAGACCTCCGTTGACAGTGAGAAGCTTCCCTATGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGACGGGGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAATTCGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCACAATTTCGTCACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1107 0.4986 MEQAPVGLRGSVHEGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPNSDGARKPPNCHVSTNHKPYLLNSFGGNLTFPSNAALIERAAKFSVFAGENSTSPGEACLLRAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPVVENKNKKTTAKRKEREKKVTVRGSLKKSKSVADETSVDSEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFVTPENSLLSYDSSANSASLHSNQLKMEL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01979 368 Coils Coil 248 268 - -
Vian2g01979 368 FunFam transcription factor bHLH48-like isoform X1 205 277 - -
Vian2g01979 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Vian2g01979 368 CDD bHLH_AtBPE_like 198 283 - -
Vian2g01979 368 Gene3D - 205 277 IPR036638 GO:0046983
Vian2g01979 368 SMART finulus 214 264 IPR011598 GO:0046983
Vian2g01979 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 99 352 IPR024097 GO:0006355
Vian2g01979 368 MobiDBLite consensus disorder prediction 139 158 - -
Vian2g01979 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Vian2g01979 368 MobiDBLite consensus disorder prediction 159 191 - -
Vian2g01979 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Vian2g01979 368 MobiDBLite consensus disorder prediction 130 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01979 Vian-Chr2 39386825 39401015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01979 7 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.444 5.84e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g01979 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01979 - - vun:114168708 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01979 2 39386825 39401015 Vian2g01979 2 39386825 39401015 ECH