Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01976 ATGCTCCAGAATTCAACAAATATGGAACAAACCATGTTAACCACTCAAGAAGGCACGCCCAGGAATTGGAATCAAGACGCAATGCTACTCCATCAACACCTTGTCACTCCACAAATGGAAAGCACTTCTCAAGGCTCAATCAACAATTCCACCTGCAGTTCATCCCTTCAGTATCATGTTTTATCCCTTTTAGAGGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTGTCTTGCAATGTTGGGTCCATTGCTGCCACAGCGACAGCAACGATTATCAATGAAAGGGAACGAAACGATTGTGGAGAGAATGATCGAAGACAGCACGAGTCGTGTCTTGATTTGGTTGCTAAAACAATCGGTAGCAAGAGCTCTGTGTATCGAGGAGTAATCAAGTGCAACGATGATCGTTTTGAAGCATTTGTGTGGGATAACAGCGATCCAGGGGAAAAAGGAAGAACAGGTGCTTATTCATCTGAAGTTGACGCCGCCAAAGCTCATGATTTGGTGTCAATCAGAATAGGGGGCTTAAAAGCATTAACCAATTTTCATGTGAGATGTTATTCCAAGGACATGGATGAAATGAGAAGAATGAGCAAATGGGACTATATTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGACGGTGATTCCCCTTTCCGTGGCGTCTACAGGGTACCCACAAGCAGAAAATGGGAAGCAAGGCTCGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGAAAGCAATTACCAACTTTGACTGGAATTCGTATGAAACTGAGGGCATAATGGAGAGTGTGATTGCTCAAGCAACGGACGGATCGATCATTCTGCAGAAAGAAGAAAAAAGCAAAGAACCCGAAGCATCTCCTCAAAACAGCTCCTCAGTTCAATGCCATCCTCTACCACCCAGCATCCCATCCATTTGTCGTTGCTGCCACAACCAAATTCTCACACCAACCAACCCTCATGCTCTTGGTACCATTGCTGATACTGCAGGAAACAGTGCAATTAACAATTCAATTGTTAACGATGCTGTACAGTTTCCAAACGAGAATGCAACACAGCAACAGCCCCGACCACTTCAGACTCCGAGGCAAGTGAGTTTCAACGATGGCTCCAATCAGGACCTTGTCAACAACAACAACAACAATCAGCATCCAAATCATAATGCAGCACAGCAACAGTCACTTCAGACTCCGAGGCAAGTGAGTTTTAACAATGCCTTTAATCTGAACCTTGTGAACAATAACTACAACAACAGCAACAACCAGTTTCTGCCTCAGGGTTCTAACCTTGCTTTGCCTGCTACTGGCATCCGAAATCTAGAGTTAGAAAAGTGCGTCCGTTTCCCTGATTGGAGATCAGGTTTCGGAAAGAAGTTACTTGGGGGGAACTTGGAATTGGAACCTTTAAACAACGTTGCTGCCCTCAGTCTGCAAGCTCTACCACAAGTCACGCTGAATGGAAGTACAGGAGCAACACAGCTACACGCACCTGCATTGCACCAAAGTTATGAGCATCAGAACTTGAACTCCTGCACCCCTGATAGTTTTCAGAATCCTGTTTCTGAACCAAACAACAACGGCTTCCAAAGTCAACTTGATTTGGACATGAGAGATTATCTCAACAGATCTTACATAGAAGACACCGATTTCACATGTGATTATGACATGTTTTCAGCCATGAATGGGGGTAGATAG 1791 0.4428 MLQNSTNMEQTMLTTQEGTPRNWNQDAMLLHQHLVTPQMESTSQGSINNSTCSSSLQYHVLSLLEGIINEKHIEETLIQSKLLSCNVGSIAATATATIINERERNDCGENDRRQHESCLDLVAKTIGSKSSVYRGVIKCNDDRFEAFVWDNSDPGEKGRTGAYSSEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRRMSKWDYICAVRGLGKGYTDGDSPFRGVYRVPTSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGKAITNFDWNSYETEGIMESVIAQATDGSIILQKEEKSKEPEASPQNSSSVQCHPLPPSIPSICRCCHNQILTPTNPHALGTIADTAGNSAINNSIVNDAVQFPNENATQQQPRPLQTPRQVSFNDGSNQDLVNNNNNNQHPNHNAAQQQSLQTPRQVSFNNAFNLNLVNNNYNNSNNQFLPQGSNLALPATGIRNLELEKCVRFPDWRSGFGKKLLGGNLELEPLNNVAALSLQALPQVTLNGSTGATQLHAPALHQSYEHQNLNSCTPDSFQNPVSEPNNNGFQSQLDLDMRDYLNRSYIEDTDFTCDYDMFSAMNGGR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01976 596 SMART rav1_2 132 196 IPR001471 GO:0003700|GO:0006355
Vian2g01976 596 SMART rav1_2 226 289 IPR001471 GO:0003700|GO:0006355
Vian2g01976 596 CDD AP2 227 285 IPR001471 GO:0003700|GO:0006355
Vian2g01976 596 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700|GO:0006355
Vian2g01976 596 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Vian2g01976 596 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Vian2g01976 596 Gene3D AP2/ERF domain 226 284 IPR036955 GO:0003700|GO:0006355
Vian2g01976 596 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 97 386 - -
Vian2g01976 596 MobiDBLite consensus disorder prediction 381 428 - -
Vian2g01976 596 MobiDBLite consensus disorder prediction 310 329 - -
Vian2g01976 596 SUPERFAMILY DNA-binding domain 226 284 IPR016177 GO:0003677
Vian2g01976 596 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700|GO:0006355
Vian2g01976 596 Pfam AP2 domain 227 275 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01976 Vian-Chr2 39327541 39330891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01976 124 315 AP2-EREBP Transcription Factor Family AT1G51190 37.313 7.40e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g01976 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01976 - K09285 pvu:PHAVU_001G137500g 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01976 2 39327541 39330891 Vian2g01976 2 39327541 39330891 ECH