Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01973 ATGGTGCAGAAGAAAAAAGCTAGGGTTTCTGACGACGAGGAAATGAAAGGGCAGGGAGATGAAACCAGCCTCTATCAGGTTATTGGCGTGGAGAGAACTGCTTCTCAGCAGGAAATAAAGAAGGCTTACTACAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTCCAACAACTGCAAAAGGTGATATCGATTCTTGGGGATGAAGAGAAGAGGACACTATATGATCAGACCGGATGTGTTGACGATGATGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTGAGGAGTTCGAAACAAACTACAAGGGATCTGACTCCGAAAAAAATGATTTGATGGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGATTCACACCGATTCAAGGATATTCTAGATGAGGCTATAGCTGCTGGAGAATTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATTTGAAACCAAACCGTCTCCAAATCCTTTGAGGGAAAAGTCTAACAAGCAGTCAGAAACAGATCTGTATGCAATGATAGCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGATGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGCGAAAGCTAGAGACTGGTAGATCCTCCAAAAAGTCAAAACAATCCAAGCGAAATTAA 828 0.4179 MVQKKKARVSDDEEMKGQGDETSLYQVIGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRTLYDQTGCVDDDDLAGDVVQNLQEFFRTMYKKVTEADIEEFETNYKGSDSEKNDLMDLYKKCKGNMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKATKAYQKWAKEVFETKPSPNPLREKSNKQSETDLYAMIAQRRNERKGQFDSMFSSLVSKYGGDDMPEPSEEEFEATRRKLETGRSSKKSKQSKRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01973 275 CDD DnaJ 25 77 IPR001623 -
Vian2g01973 275 SMART dnaj_3 22 80 IPR001623 -
Vian2g01973 275 MobiDBLite consensus disorder prediction 251 268 - -
Vian2g01973 275 MobiDBLite consensus disorder prediction 237 275 - -
Vian2g01973 275 PRINTS DnaJ domain signature 80 99 IPR001623 -
Vian2g01973 275 PRINTS DnaJ domain signature 25 43 IPR001623 -
Vian2g01973 275 PRINTS DnaJ domain signature 60 80 IPR001623 -
Vian2g01973 275 PRINTS DnaJ domain signature 43 58 IPR001623 -
Vian2g01973 275 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Vian2g01973 275 Pfam DnaJ domain 24 85 IPR001623 -
Vian2g01973 275 Gene3D DnaJ domain 7 102 IPR036869 -
Vian2g01973 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 13 271 IPR042977 -
Vian2g01973 275 SUPERFAMILY Chaperone J-domain 21 95 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01973 Vian-Chr2 39290408 39292356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01973 25 85 C2H2 Transcription Factor Family AT1G74250 36.364 2.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01973 K09529 - gmx:100793909 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01973 2 39290408 39292356 Vian2g01973 2 39290408 39292356 ECH
Vian2g01973 2 39290408 39292356 Vian3g02494 3 38844802 38847103 PCT