Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01969 ATGGCTGACCCTTACTCCAATTTTTTCTCATCCTCTTCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACAACCGACACCACTTTTTTCCACTACCACCACCACCACAACCATACTTCTTCCACAACTGCAACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTACCCCTTCTGAGACTCAGTCCGGCCAAGCAAGAGGAGGAGGAGGAGGACCTGTCTTGCACTGGACCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCTCCGGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATTAAACCTTTCATGTGTAGGAAATGCGGTAAGGCTTTTGCGGTGAGGGGCGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAACAAGATAACGATGATTCCACACAGTGA 1050 0.479 MADPYSNFFSSSSFFRFNHHFPSSNPSPHAPYVHHNFINHSKTTDTTFFHYHHHHNHTSSTTATFSSFPPSPPLREELPLLRLSPAKQEEEEEDLSCTGPMDVEERMHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01969 349 MobiDBLite consensus disorder prediction 135 162 - -
Vian2g01969 349 SMART c2h2final6 271 291 IPR013087 -
Vian2g01969 349 SMART c2h2final6 187 209 IPR013087 -
Vian2g01969 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Vian2g01969 349 Gene3D Classic Zinc Finger 249 324 - -
Vian2g01969 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Vian2g01969 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
Vian2g01969 349 PANTHER ZINC FINGER PROTEIN WIP2 39 345 IPR043584 GO:0003700|GO:0010468
Vian2g01969 349 SUPERFAMILY beta-beta-alpha zinc fingers 252 291 IPR036236 -
Vian2g01969 349 Gene3D Classic Zinc Finger 186 209 - -
Vian2g01969 349 FunFam Zinc finger protein WIP2 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01969 Vian-Chr2 39237917 39240257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01969 1 346 C2H2 Transcription Factor Family AT3G57670 61.140 2.40e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01969 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01969 - - gmx:100802907 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01969 2 39237917 39240257 Vian2g01969 2 39237917 39240257 ECH
Vian2g01969 2 39237917 39240257 Vian11g00341 11 3214370 3216386 ECH
Vian2g01969 2 39237917 39240257 Vian3g02490 3 38776373 38778464 PCT