Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01964 ATGGCAACTGCGGGGAGTAAGAAGCCTTTATCATTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATTGCTACCGGCGCGTCCAGGAATTTGGACACCGCTCAAAAGAGGGGTTCCACAATCCTTAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACATAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTTAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTGATACAGTTGAGCAAAGGAGTGCACAGGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCAACCTGCAGTGTCCAAGAAGGATATATCCTTTACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTTGAAAGCTCTGTCGTCAAAGAATGCGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCAAATATTGCTGTTGACAACATTGTAGAGCGGCTCGTTCCACATAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAACTTCTGAAAACCAAAGACAGAAATACAAGAAAGGATATACAGAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCCAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGCAGAACTCTCTTTGAACGACTTGCAGAAACGTATGGAGATGAAATCACATCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATGCAAGTGTTAGTGCACATATGTTATATGATCTTGACGGTGTGAAGCGGACATCTTCAACTGAACCAACCCTTCTTCTTGTAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAAGTTACTGTGGCTCATGCGAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATAGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAAAACAAGGAGGACCGGTTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAAGGAAGGGAGAAGGAAGCCATTATCATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTAAGTGATCGCCGGCGAATGAATGTAGCCGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCACGGTGAATATCTGATGTGTAGCAAGCAGAGGCAATAG 1932 0.4275 MATAGSKKPLSLQQFISVTAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPVLFGERQPAVSKKDISFTPYNRNLDQSQKEAVLKALSSKNAFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAETYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHASVSAHMLYDLDGVKRTSSTEPTLLLVDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLMCSKQRQ 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01964 643 CDD DEXXQc_SMUBP2 193 441 - -
Vian2g01964 643 Gene3D - 440 642 IPR027417 -
Vian2g01964 643 Gene3D - 20 424 IPR027417 -
Vian2g01964 643 Pfam AAA domain 417 613 IPR041679 -
Vian2g01964 643 Coils Coil 295 315 - -
Vian2g01964 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 629 IPR027417 -
Vian2g01964 643 CDD SF1_C_Upf1 442 630 IPR047187 -
Vian2g01964 643 FunFam DNA-binding protein SMUBP-2 38 140 - -
Vian2g01964 643 FunFam P-loop containing nucleoside triphosphate hydrolase 440 643 - -
Vian2g01964 643 NCBIfam IGHMBP2 family helicase 342 636 IPR004483 GO:0003677|GO:0005524
Vian2g01964 643 SMART ultradead3 190 441 IPR014001 -
Vian2g01964 643 Gene3D - 38 140 - -
Vian2g01964 643 SMART AAA_5 208 460 IPR003593 GO:0016887
Vian2g01964 643 Pfam AAA domain 194 408 IPR041677 GO:0004386
Vian2g01964 643 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 38 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01964 Vian-Chr2 39157024 39169641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01964 167 377 Core DNA Replication Machinery Family AT1G08840 27.014 2.28e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01964 - K19036 gmx:100801854 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01964 2 39157024 39169641 Vian2g01964 2 39157024 39169641 ECH