Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01963 ATGCAGTTCCAAGTATCATCAAGCAGTGATACTCAAAGCACCACTTTCCAGTTATCTAAGTTATTCAACTATCACAGTATTTTAACCATGGATACTTGCAAGAAGTCACCCCTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGTGGTCCACAAAATGCCTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCATCTGCAGCCCAGGTCTACTTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCGATGTTCCCTTCCTGTGGATTACTCAATTTAAGTGCTCAACCCAGTGTTCATTTTATCCATCAGAGGCTACAAGAGCTAAAGAAAAATTCAGTTGAGAGGCAGTCCCCAAATAGTTCATCCAATGATCCAGAGGCAGAAATTCAGAATGTAGTGGACAACACTAATCATGCAGAAAGTCCTCCAAAAGACTCTCAAACATCATCAGAGGAGGTTCCAGGAGATATTCAAGAGAAACCCCAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGATGAAAAACAGTCAGCTGATAGCACAGAAAGTTCAACAGTTCCTGAAGCTGTGTTGAGATATGAAAATGACGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCTTTGATTGAGATGCATGGAATTGCTGGTATTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCCCAAATGATGACCTTACTTTTTCAACTTCCATTTGGAACTTCTAA 927 0.4315 MQFQVSSSSDTQSTTFQLSKLFNYHSILTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSPITPGKFKWFPSKNFISMFPSCGLLNLSAQPSVHFIHQRLQELKKNSVERQSPNSSSNDPEAEIQNVVDNTNHAESPPKDSQTSSEEVPGDIQEKPQIDLHEFLQQLGILKDEKQSADSTESSTVPEAVLRYENDELGVFSDTSVNWEALIEMHGIAGIQELESTQLEAYGPNDDLTFSTSIWNF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01963 308 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Vian2g01963 308 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Vian2g01963 308 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Vian2g01963 308 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Vian2g01963 308 MobiDBLite consensus disorder prediction 194 213 - -
Vian2g01963 308 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Vian2g01963 308 MobiDBLite consensus disorder prediction 194 215 - -
Vian2g01963 308 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Vian2g01963 308 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Vian2g01963 308 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Vian2g01963 308 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 264 - -
Vian2g01963 308 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01963 Vian-Chr2 39154024 39154950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01963 34 308 AP2-EREBP Transcription Factor Family AT3G57600 54.417 3.59e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g01963 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01963 - - var:108328773 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01963 2 39154024 39154950 Vian2g01963 2 39154024 39154950 ECH