Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01952 ATGGCCGAATCATTTCTCTTCAGCATAGCACAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTCGTGGGTTTATACGACGATCTTCGAGACCTTACAAAGACTCTCTCTTCGGTCAAGGTTGTGCTGTTAGATGCTGACCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCATTCAACTTAAAACTGTCTTCTCGGAAGCTGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAACAAAGTGGTCAAAGCTCATGGTAGCAGCAAAGACAAGGTAAGTCATTTCCTCTCAACCTATAATCCACTTGTTTTTCGTTTCAAGATGGCACAACAAATTAAAAATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATTGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACGAGTCTATCAGTTATTCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAATTGATTATCAAAATCATCAATTCTGCCAATGATGTAGATGTTCCCCCTCACCAACAGAATTTGAACATGTTGGATTTGGAGCAACTGCAAAACCAATTGAAAAGAAAACTTTCCGGTAAAAAATTTCTTGTTGTTTTGGATGACGTATGGAACGAAGAGCGTGTTAAATGGATTGAGTTGAGGAATTTAATCCAAGTAAGTGGAGCAGGAAGTAAAGTTGTAGTGACCACACGTAGTCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAAGAGGAGTCATTCTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAATGCATCCTCATTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTCCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCAAAATTTGAGGACAGTGAATGGGAATATGTGAGTGACAATGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCTTACTTGAAACAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCCCTAGTTATGAAATGGCTGCGATTTGGGGATCACTTGGACTCATTGCACTACCAAAAACGAGTAGGACACTTGAAGATGTGGCAAATCAATATTTGCATGAACTCTTGTCAAGATCCTTTCTCCAAGATTTTGAAACCTTTGGCACTATGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTTGCCCTATTTGTTGCGACGGATGAGTGTCTACATGTGAATTTCAAAATTCAAAATATTCCAGATAATGTTCGACATCTGTCTTTTGCCGAGAGCAGTTTGTTCGGAAATTTAGTCACCAAAAAATCAGCAGTTGTGAGATCCGTACTGTTTTCAAATGGTGCAGCAGCTGCCAAGGATGAAGCTTTACTAAATACGTGTCTGTCAAAGTACAAATGCTTGCGAGTTTTGGATTTACGTAGTTCGACATGCAAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATTAGCGAAAATCTCAACATTAAGAGACTCCCGGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCAATTAATAGATGCTTGAAACTGGAAATATTGCCCAAAGGATTAAGAAAACTAATCAGTATCCGTTCTTTGGACTTTAGCACAAAGCAAACTATTTTGCCTGTGAATGAGATCGCCCAATTGAGGTCGCTTGAATACTTGTACATTGAATCATGCCATAATGTGGAGTCCATATTTGGTGGGGTGAAATTCTCTGCTCTTAAAACATTGGTCGTTCGGAACTGTCAGAGTGTAAAGTCAATGTCGCTGGATGGTAAAAATTTTCCTGAATTAGAAACATTGATTGTTGCGGACTGCGGTAATTTGGACTTGGAACTGTGGAAGGGCGATCATGAAAAAGAAAGCCCGAAGCTGAAGTTAAAATTTATTGGATTTAACAGTTTATCACAGCTGGTGGCCCTGCCTAAATGGCTTCCGGAAGCTGCCAAATTCTTACAGTGCTTGTATGTTTTAAATTGTGACAATATTGAAACACTTCCAGATTGGTTAACAACTCTGACTGATCTCAAAACTCTTGCTTTAATAAATTGTCCAAATTTGGTATCTCTCCCAAATAACATCCATCACCTCGCTGCACTCGGAAGTTTGACAATTAAAGATTGTCCTGACTTATATACAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAAACATTGTGATTGATGAACCAGAAGAACCTAAGAAGAATCAGAGGAAGAGCCCGACTTAA 2616 0.3918 MAESFLFSIAQSLIAKLASHAFQEASRVVGLYDDLRDLTKTLSSVKVVLLDADQKQDHNHQLREWLIQLKTVFSEAEDVLDEFECQTLRNKVVKAHGSSKDKVSHFLSTYNPLVFRFKMAQQIKNINNRLDKVAADRHKFSLQIIDVDTRVVHWRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDVDVPPHQQNLNMLDLEQLQNQLKRKLSGKKFLVVLDDVWNEERVKWIELRNLIQVSGAGSKVVVTTRSHSIASMMGTVPSHILEGLSEEESFSLFVKWAFKEGEEEMHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWEYVSDNEIWNLPQKKDDILPALKLSYDLLPSYLKQCFALFSLYPKDYLFPSYEMAAIWGSLGLIALPKTSRTLEDVANQYLHELLSRSFLQDFETFGTMFRFRIHDLVHDLALFVATDECLHVNFKIQNIPDNVRHLSFAESSLFGNLVTKKSAVVRSVLFSNGAAAAKDEALLNTCLSKYKCLRVLDLRSSTCKTLPRAIAKMKHLRYLDISENLNIKRLPDSICKLQSLQVLSINRCLKLEILPKGLRKLISIRSLDFSTKQTILPVNEIAQLRSLEYLYIESCHNVESIFGGVKFSALKTLVVRNCQSVKSMSLDGKNFPELETLIVADCGNLDLELWKGDHEKESPKLKLKFIGFNSLSQLVALPKWLPEAAKFLQCLYVLNCDNIETLPDWLTTLTDLKTLALINCPNLVSLPNNIHHLAALGSLTIKDCPDLYTKYEPNVGEFWPKISHIKNIVIDEPEEPKKNQRKSPT 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01952 871 Gene3D - 420 508 IPR036388 -
Vian2g01952 871 SUPERFAMILY L domain-like 498 839 - -
Vian2g01952 871 Gene3D Ribonuclease Inhibitor 742 844 IPR032675 -
Vian2g01952 871 Gene3D Ribonuclease Inhibitor 519 738 IPR032675 -
Vian2g01952 871 Gene3D - 10 124 - -
Vian2g01952 871 CDD RX-CC_like 2 134 IPR038005 -
Vian2g01952 871 Gene3D - 335 419 IPR042197 -
Vian2g01952 871 FunFam Probable disease resistance protein At1g61300 150 329 - -
Vian2g01952 871 PRINTS Disease resistance protein signature 621 637 - -
Vian2g01952 871 PRINTS Disease resistance protein signature 275 289 - -
Vian2g01952 871 PRINTS Disease resistance protein signature 372 386 - -
Vian2g01952 871 PRINTS Disease resistance protein signature 195 210 - -
Vian2g01952 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 434 IPR027417 -
Vian2g01952 871 PANTHER DISEASE RESISTANCE PROTEIN RP 35 814 IPR044974 GO:0006952
Vian2g01952 871 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vian2g01952 871 Pfam Leucine rich repeat 579 634 IPR001611 GO:0005515
Vian2g01952 871 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vian2g01952 871 Gene3D - 153 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01952 Vian-Chr2 38980905 38983520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01952 178 833 WRKY Transcription Factor Family AT5G45050 22.128 9.61e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01952 - - pvu:PHAVU_001G133600g 1222.22