Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01947 ATGACTTTTGAAGGAGACGATTCCCTCCTTTTCCTGGATTTCTGGTTAACTCTGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTGATCAGATATATTGTTTGGAGCACCGAGGTTATATTGAGCACAAGTGCACAAAGCCCAACAAAGAAGATGTCAAAGTTGTCATATGTCCCCTTTGCGCAAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAGCTTGGGACCATCATGTTAACATTGATTGTGATCCGTCAAATTACCAAAAGGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTATTGGTATTCTCCAACACAATCAAGTGCAGGGATTGCCTGGAAGACCATTGCTTGAAGCACCGGTTTGGCCCTGATCACAAATGTTCTGGTCCCAAAAAGTTAGAGAAAAGTTTTTCATTCATGAGTTTATTTAATACGATTAAAAAAGAGGAGCCAAAGCCCAATTTAACTTCGACAGCATCATCTAAGTGGACTTCAAGCTTTCTCAGCGTGGCTTCTAACATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCAAGTTTGGCTGGCAGCAAGGGATAGTGCGGGACCGAACAGTGGCAGTGGAAATAAAAATGACCTTCAAGAGGAATCTTGCCCTCAATGTGGTGTAAAGTTTTCCTCTGCGATTTCTTTGGTGGATCATGTGCAACAAGTTCATGAAAGCAATGGGAAACCAGTAGGGGTTAAGAAGATTGAGGCATGCCCCAAGTGTAGTGGAGGGTTTGTTGACCCGGTATCCCTAGTGGAGCATGTTGAGAGAGATCATGGTGGTGGTTCTGGAGCATAG 870 0.4437 MTFEGDDSLLFLDFWLTLQLDFLPFTCDRCDQIYCLEHRGYIEHKCTKPNKEDVKVVICPLCAKGVRLIPDQDPNIAWDHHVNIDCDPSNYQKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGPDHKCSGPKKLEKSFSFMSLFNTIKKEEPKPNLTSTASSKWTSSFLSVASNIRASAEASMSKLSNEINQVWLAARDSAGPNSGSGNKNDLQEESCPQCGVKFSSAISLVDHVQQVHESNGKPVGVKKIEACPKCSGGFVDPVSLVEHVERDHGGGSGA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01947 289 Gene3D - 81 149 IPR035896 -
Vian2g01947 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Vian2g01947 289 Pfam zinc-finger C2H2-type 226 247 IPR041697 -
Vian2g01947 289 Gene3D - 17 64 IPR035896 -
Vian2g01947 289 Pfam AN1-like Zinc finger 19 50 IPR000058 GO:0008270
Vian2g01947 289 Pfam AN1-like Zinc finger 100 140 IPR000058 GO:0008270
Vian2g01947 289 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Vian2g01947 289 SUPERFAMILY AN1-like Zinc finger 92 144 IPR035896 -
Vian2g01947 289 ProSiteProfiles Zinc finger AN1-type profile. 94 144 IPR000058 GO:0008270
Vian2g01947 289 SMART AN1_Zf_4 100 141 IPR000058 GO:0008270
Vian2g01947 289 SMART AN1_Zf_4 13 51 IPR000058 GO:0008270
Vian2g01947 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 19 250 - -
Vian2g01947 289 SMART c2h2final6 260 283 IPR013087 -
Vian2g01947 289 SMART c2h2final6 224 247 IPR013087 -
Vian2g01947 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Vian2g01947 289 Gene3D Classic Zinc Finger 224 288 - -
Vian2g01947 289 SUPERFAMILY AN1-like Zinc finger 19 59 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01947 Vian-Chr2 38930519 38932195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01947 19 289 C2H2 Transcription Factor Family AT2G41835 55.109 8.81e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01947 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01947 - - gmx:100806459 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01947 2 38930519 38932195 Vian2g01947 2 38930519 38932195 ECH
Vian2g01947 2 38930519 38932195 Vian3g02465 3 38319018 38322009 PCT