Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01944 ATGGAGCAACTGCAAAAACAATTGAGAAACAAACTTGTTGGTAAAAAGTTCTTACTCGTCTTGGACGATGTATGGAATGAAGACCGCGTTAAATGGGTTGAGTTGAGGACTTTAATACAAGTAGGTGCTGCTGCAGGAAGTGCAGTTCTAGTGACTACTCGTAGTCACTCCATTGCATCCTTGATGGGCACGGTTTCCCCTCACATTTTACAAGGTCTTTCTTTGGAGGATTCAGTGTCTCTGTTTGTCAAATGGGCATTTAAAGAAGGAGAAGAGGAAAATTATCCTCATTTGATAAATATTGGCATAGATATTGTGAAAAAATGCAGCGGGGTTCCATTGGCAGTGAGAACTATAGGGAGTTTATTATTTTCCAAATTTGAAGCAAAGGAGTGGAAATATGTGAGAGACAGTGAAATTTGGAATTTGCCACAGAAAAAAGAGGATATTTTACCAACACTTAAATTAAGTTATGATCTTATGCCATCCTATTTGAGGCAATGCTTTGCTTTGTTTTCCCTTTACCCAAAGGATTACCTTTTCGTTAATTTAGAAGTAATTACGCTTTGGGGTGCACTAGGACTCCTTCGGTCTCTGAAAAAGAATATGACACAAGAAGATGTTGCCAATCAGTACTTGTATGAACTACAGTCAAGATCTTTTATTCAAGATTTTGTCAGCTATGGAACAGCTTATACATTTAAAATACATGATTTGGTGCATGATCTAGCCCTGTTTGTTGCAAAAGATGAGTGTCTACTTGTAAATCCCGGCATTCGAAGTATACCTGAGAGTATTCGTCATCTGTCATTTGTTGAAAACGATTTGGATGGCAATTCAATCAGTTCAAAATCAGTAGGTGTGAGAACCATTCTCTTTCCTAAGGCTGGTGTGGGTGCCAAGAGTGAAGCTTTCTTTACATTGGTTTCAAGGTACAAATACTTGCATATTTTGGATTTAAGTTATTCTTCAGTTGAAACTTTGCCTGATTTCATTGGGAAGTTAAAACATTTGAGATCTCTCTGTCTTCATAATAATAAGAAAATCAGGGGACTCCCTGATTCTATTTGTGAGCTTCAAAGTTTGCAAGAGTTGGACCTTGGTGGATGCATGGAGCTGGAAGCGTTACCCAAAGGATTAAGAAAATTGATCAGTCTTCAAGATTTTGTCATAACCACAAAGCAAGCTGTTTTGCCCGAGAATGACATTGCAAACTTGAGCTCTCTTCAGTATTTGACTATTGAATGTTGTGATAATGTGGAGTCTTTATTCTCAGGGATAGAACTTCCTTATCTGAAAGGATTGAGTGTTATTAGCTGTAAGAGACTAGAGTCTGTGCCATTTGACAGTAAGCATTTTCCTGCAATAGAGACATTGTGTATTGGGAACTGTGACAAAATAGAATTGTCCAAGGGTCATGAAGGCCAGAAGTTCTTCTTAAAGTTAAAAACAATACAGTTTCTTTCACTGCCACAGATACGGACATTGCCTCATTGGCTTCAAGGATCTATTAAAACACTGCTATGCTTGAGACTAGATCACTGCCGCAATCTTGAGGTGCTTCCCGATTGGCTGCCAATGCTAACTTGTTTGAAAGCACTTGACATCAAAGGTTGCCCGAAATTGCGTTCTCTGCCAGATGGCATCAATTGCCTCGCTGCCCTTGAACGTTTGGAAATCATTGTCCATCCTGAATTATTCAGAAAACTCACGCTGCAAGTCAGAGAGCATTGGGACCAAATGTCACACATCAAACGAATTAGCATTCTTGAAAGTAAATAG 1782 0.3889 MEQLQKQLRNKLVGKKFLLVLDDVWNEDRVKWVELRTLIQVGAAAGSAVLVTTRSHSIASLMGTVSPHILQGLSLEDSVSLFVKWAFKEGEEENYPHLINIGIDIVKKCSGVPLAVRTIGSLLFSKFEAKEWKYVRDSEIWNLPQKKEDILPTLKLSYDLMPSYLRQCFALFSLYPKDYLFVNLEVITLWGALGLLRSLKKNMTQEDVANQYLYELQSRSFIQDFVSYGTAYTFKIHDLVHDLALFVAKDECLLVNPGIRSIPESIRHLSFVENDLDGNSISSKSVGVRTILFPKAGVGAKSEAFFTLVSRYKYLHILDLSYSSVETLPDFIGKLKHLRSLCLHNNKKIRGLPDSICELQSLQELDLGGCMELEALPKGLRKLISLQDFVITTKQAVLPENDIANLSSLQYLTIECCDNVESLFSGIELPYLKGLSVISCKRLESVPFDSKHFPAIETLCIGNCDKIELSKGHEGQKFFLKLKTIQFLSLPQIRTLPHWLQGSIKTLLCLRLDHCRNLEVLPDWLPMLTCLKALDIKGCPKLRSLPDGINCLAALERLEIIVHPELFRKLTLQVREHWDQMSHIKRISILESK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01944 593 Gene3D Ribonuclease Inhibitor 251 474 IPR032675 -
Vian2g01944 593 Gene3D Ribonuclease Inhibitor 475 576 IPR032675 -
Vian2g01944 593 PANTHER DISEASE RESISTANCE PROTEIN RP 3 560 IPR044974 GO:0006952
Vian2g01944 593 Gene3D - 1 66 IPR027417 -
Vian2g01944 593 Gene3D - 158 245 IPR036388 -
Vian2g01944 593 PRINTS Disease resistance protein signature 357 373 - -
Vian2g01944 593 PRINTS Disease resistance protein signature 11 25 - -
Vian2g01944 593 PRINTS Disease resistance protein signature 109 123 - -
Vian2g01944 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 171 IPR027417 -
Vian2g01944 593 SUPERFAMILY L domain-like 235 560 - -
Vian2g01944 593 Pfam Leucine rich repeat 315 370 IPR001611 GO:0005515
Vian2g01944 593 Gene3D - 72 157 IPR042197 -
Vian2g01944 593 Pfam NB-ARC domain 3 159 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01944 Vian-Chr2 38882080 38883861 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01944 8 545 WRKY Transcription Factor Family AT5G45050 22.203 1.06e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01944 - - gmx:100805394 801.971