Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01941 ATGGCCGAGTGTTTTGTCTTTGATATTACTGAATCGTTGCTAAGCAAGCTAGCTTCTTATGTTTACGAAGAAGCTTCTCGAGCCTATGGTGTGTATGACGATCTTCAAGGGATCAAAGACACCTTATCAATAGTTAAAGGTGTGCTGTTAGATGCTGAGGAGAAGAAGGAACAAAGTCATGGCTTGCGGGAATGGCTCAGGCAGATTCGAAACGTCTGCTTCGATGCTTCGATGTACTCAGGCACCAGGAATATACCTGAGCAAGTAAGGCATTTATCAGTTGTTGAAAATGATTCACTTAGGGATTCTTTGTTTCCCAAGTCCAGTAGATTGAGAACTATATTATTTCCGACAGATGGAGTTGGTGTTGACAGTGTAGCTCTTTTGGATGTATGGATAGCAAGATACAAATTCTTGCGTATTTTAGATTTAAGTGATTCCTCTTTTGAGACATTTCCCAATTCAATTGCTAAACTGGAGCATCTGCGAGCACTCAGTCTTGAAAATAACCGAAGGATAAAAAGACTTCCTCAATCCATATGCAAACTCCAAAATTTGCAAGCTTTGACTTTGAGAGGATGTGTGGAGCTTGAAACATTGCCTAAAGGATTCGGGATGTTAATCAGCCTTCGAAAATTGTTTATCACCACAAAACAGTCTATTCTGTCAGAGGATGAATTTGCAAGCTTGATCAATCTTAATATTTTGAGTTTTGAATTTTGTGACAATTTGATGTTTCTGTTCCGAGGGGCACAACAACTCAAATCCCTTGAAGTTTTGCTTGTTCAATCATGTAGGCGTCTAGAGTCCTTTCCATTTCATATTCTCCCTAAACTGGAGGTTCTGTTTGTCATAAGGTGTGAGATGCTAAATCTGTCCTTGAACTGTGAAAACCCCATCGAGAGATTGAGGATGAAGTTTCTGCATATTGAGGAATGTCCAAGGCAACAGACATTGCCTCAATGGATTCAAGGAGCTGCAGAAACTTTGCAGACGTTGTTAATTTCAAATTTGTATAGTCTTGAGATGCTTCCTGAGTGGCTTACAGCAATGACTCATCTTAAGATGCTCCATATTGTTAACTGTCCTCAGCTGTTGTATCTCCCGAGTGACATGCATCGCCTCAGTGCCCTTGAACATTTGACCATAGATGGTTGTTCTGAATTGTGTCGAAAATGTGAACCACAATCTGGTGAGTACTGGTCTTTCATTGCTCACATCAAACACCTTTCCATTGGAGAAACAAGAGAAGGGAAACTCCTCTTCCAAATGCAGAAGAAGATTCGATTGAAATTGCAGGATTTGCAGAATTAA 1314 0.4018 MAECFVFDITESLLSKLASYVYEEASRAYGVYDDLQGIKDTLSIVKGVLLDAEEKKEQSHGLREWLRQIRNVCFDASMYSGTRNIPEQVRHLSVVENDSLRDSLFPKSSRLRTILFPTDGVGVDSVALLDVWIARYKFLRILDLSDSSFETFPNSIAKLEHLRALSLENNRRIKRLPQSICKLQNLQALTLRGCVELETLPKGFGMLISLRKLFITTKQSILSEDEFASLINLNILSFEFCDNLMFLFRGAQQLKSLEVLLVQSCRRLESFPFHILPKLEVLFVIRCEMLNLSLNCENPIERLRMKFLHIEECPRQQTLPQWIQGAAETLQTLLISNLYSLEMLPEWLTAMTHLKMLHIVNCPQLLYLPSDMHRLSALEHLTIDGCSELCRKCEPQSGEYWSFIAHIKHLSIGETREGKLLFQMQKKIRLKLQDLQN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01941 437 Pfam Leucine rich repeat 139 194 IPR001611 GO:0005515
Vian2g01941 437 SUPERFAMILY L domain-like 83 409 - -
Vian2g01941 437 Gene3D - 10 77 - -
Vian2g01941 437 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 302 413 - -
Vian2g01941 437 Pfam Rx N-terminal domain 11 76 IPR041118 -
Vian2g01941 437 Gene3D Ribonuclease Inhibitor 78 437 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01941 Vian-Chr2 38818030 38825201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01941 139 201 WRKY Transcription Factor Family AT4G12020 41.270 4.71e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01941 - - gmx:100794422 528.094