Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01929 ATGAAAATAACAAATAATAAAGGGTTGTTGTTGGAAGGAGGAAGAAAGTCTACTCCACCGCCGTTTTTGCTCAAGACCTACATGCTTGTCGAGGATCCGGCTACCGACAACGTTGTCTCGTGGAATGTCGACGGGACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACATTCTTCAAGCACAGCAACTTCTCCAGCTTTGTGCGCCAACTAAATACTTATGGTTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTCAATGAGAGGTTCAAGAAAGGTGAAAGAGAACAGCTAAATGAGATTCAGAGAAGAAAAGCTTGGAGTAACAAGCAACAAGGAAATGGAGCAAACCAAGTGACAGCTCATGATTCTGATGAAGATCAAAGGTCATCATCAACTTCATCTTCTTGTGGGTACAGCACTCTGGTGGATGAAAACAAGAGGCTTAAGAAAGAGAATGGAGTGTTGAACTATGAGCTAACGAGCATGAAAAGAAAGTGCAAGGAGCTGGTTGATTTGGTGGCCAAATATTCATCACATGCACAAGAGAAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGGTTAGAGGTTGAAGGAGGGAGGGAGATTAAGAGGAATAGAGCTGAGATGAGTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAG 699 0.4435 MKITNNKGLLLEGGRKSTPPPFLLKTYMLVEDPATDNVVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSFVRQLNTYGFRKVATSRWEFFNERFKKGEREQLNEIQRRKAWSNKQQGNGANQVTAHDSDEDQRSSSTSSSCGYSTLVDENKRLKKENGVLNYELTSMKRKCKELVDLVAKYSSHAQEKEEDERPMLFGVRLEVEGGREIKRNRAEMSESASIMLSQSCK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01929 232 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 Gene3D - 14 112 IPR036388 -
Vian2g01929 232 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian2g01929 232 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 189 IPR027725 -
Vian2g01929 232 FunFam Heat stress transcription factor B-4 14 112 - -
Vian2g01929 232 MobiDBLite consensus disorder prediction 113 128 - -
Vian2g01929 232 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Vian2g01929 232 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01929 Vian-Chr2 38571176 38573111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01929 19 205 HSF AT2G41690 53.623 3.15e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian2g01929 HSF_DNA-bind 6.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01929 K09419 - gmx:100786140 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01929 2 38571176 38573111 Vian2g01929 2 38571176 38573111 ECH