Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01927 ATGGAATTGAAGGTGGTGACAGAGATGCAAGTGAGCCTCCTGCTGCTGCTGCTGATGATTGCGTTAGCAAGAACAGCAACCGCAGAAGATGATCAAGCCCTGCCCGGCTGCCCCAACAAGTGTGGAGATGTTTCAATTCCATACCCCTTTGGCGTAGGTGTGTCAAGTACCACCGGAAAAAACTGTTCCTTTGAGAGAGACATGAATCTCACCTGCGCAGACTCCATTCTATACGTAGGTAACGTCCAAGTTCTGAACATAACCCTCCTAGGTCAATTGGAGATGAATTTCTTCGTCTCCTCTATCTGCAAAAACAACATTTCTGTTGGAGTAACAGAATCCAACGAACCCACACTCCAAATTCAATCCTTCACCATTTCCAGCACGGAAAACAAGTTCATGAGTTTAGGATGCGACACGTACGGGTTTGTCAGAAGTTACGTCAACCAAACTACATACTCAACAACAGGGTGCTTGACATTATGTGGCGACAATCTAGAAAATTTGGAAAACATGCAGATGAATGATGGGAAATGTGCAGGCAGAGGCTGTTGCCAGGTGGATATACCGCCTGGAATGACGAACATCAGTATACAAGCAAACACCTTTTATAATTTCACCAAGTCTTCCGATTCCAACAGCTGCAGCGTTTCGTTTGTGGTGAAAAATGGCGGCTACAACTTCTCCATGGATCATTTGAACCGCATCCCATTCGATATGGCTCCCATGATTGTTGATTGGAGAGTTGGACATGCTGGCTGTAACGTTTCCAAGGATAAAGCCAACTATGCGTGCAAAAGTGATAATAGCGTTTGCGAGGACCCACCCTCTGCCGGTGGAAATGGCTACCTATGCAAATGTAAACCAGGTTTTGAGGGCAACCCTTACCTTCCCCAAGGTTGCACAGACTTTCCAGATTGTAAAAGGGGCAAACACAACTGCGCAAGAGCAGAGTATTGTCATGAAACTCCTGGCTCTTTCGAATGTTTATGTCCTGATGGAATGATCGGAAATGCAACAAACGAAGGTGGAGGATGCCAGCCAAAGCAGCGGGCTGATGCATTTACAAAGATCGTCATCGGAGCAGGTGTAGGATTAATTGCTCTCTTTGTGGGAGTTTCTTGGCTGTACTTGATGCTCCAGAAAAGGAGAGTCCTCAAACTAAAGGAAAAGTTCTTTCAGCAAAATGGGGGCATAATTCTAACACAGAAACTCTCTACTAGAAGAGACTCGTCTCAATCCACCATAATTTTCAGTGCCGAGCAACTCAATAAAGCCACCAACAATTTTGATGAGAATTTGATCATCGGCAAAGGAGGTTATGGAACAGTTTTCAAAGGAGTTCTCTCAAATAATCAAGTTGTCGCTATCAAGAAGTCCAAAATAGTGGACGTAAGCCAGGTGGAGCAATTCATCAACGAGGTCATTATACTGTCACAGATTAATCACAGGAACGTGGTCAAACTCCTAGGTTGTTGTCTAGATACAGAAGTTCCTTTATTGGTGTATGAATTTGTTAAAAATGGCACCCTTTTTGATTATTTGCATAAACAAAGCCAAGTGGGTAATGTATCTTGGAAAACTCGTCTAAGGATTGGCGCTGAAGCAGCTGGAGCTTTGTCATATCTACACTCAGCAGCTAGCATACCCATCATCCACAGGGATGTGAAAACTGCCAACATACTCTTGGATGACAATCACACTGCCAAAGTTTCTGACTTTGGAGCTTCGCGATTGGTTCCACAAGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAGTACATGCAAACAGGCCAATTGACTGAAAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTTGTAGAACTGCTAACTGGGGAGGAGCCTTTCTCTTTTCAAAGGGCAGAAGATAAACGAAGTCTCACATTTCACTTTGTATGTAGCTTGGAAGAGGATCATCTATTTGATTTTCTTCAGATTGGTGTTGAGGATGAAGAAAATAAACAGGAGATCATGCAGGTTGCTATTCTTGCAGCCAGGTGCTTGAAACTTAGAGGGGAGGAACGGCCTAGCATGAAGGAAGTGGCAATGGAATTGGAGGGAATAAGGCTTATGGACAAACATCCTTGGACCAATAATACAAGCCAAAATTTTGAGGAGAGACAATACTTGCTTTCTGAAGCACAAAGCATTCATGAACCTGGTGACAGTAGTGGCCAACAGAATGCTGGATATGATAGCGTGAGGGAACTTCAATTAATTGACTTTGGAGATGGAAGATGA 2286 0.437 MELKVVTEMQVSLLLLLLMIALARTATAEDDQALPGCPNKCGDVSIPYPFGVGVSSTTGKNCSFERDMNLTCADSILYVGNVQVLNITLLGQLEMNFFVSSICKNNISVGVTESNEPTLQIQSFTISSTENKFMSLGCDTYGFVRSYVNQTTYSTTGCLTLCGDNLENLENMQMNDGKCAGRGCCQVDIPPGMTNISIQANTFYNFTKSSDSNSCSVSFVVKNGGYNFSMDHLNRIPFDMAPMIVDWRVGHAGCNVSKDKANYACKSDNSVCEDPPSAGGNGYLCKCKPGFEGNPYLPQGCTDFPDCKRGKHNCARAEYCHETPGSFECLCPDGMIGNATNEGGGCQPKQRADAFTKIVIGAGVGLIALFVGVSWLYLMLQKRRVLKLKEKFFQQNGGIILTQKLSTRRDSSQSTIIFSAEQLNKATNNFDENLIIGKGGYGTVFKGVLSNNQVVAIKKSKIVDVSQVEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVKNGTLFDYLHKQSQVGNVSWKTRLRIGAEAAGALSYLHSAASIPIIHRDVKTANILLDDNHTAKVSDFGASRLVPQDQTEIATIVQGTFGYLDPEYMQTGQLTEKSDVYSFGVVLVELLTGEEPFSFQRAEDKRSLTFHFVCSLEEDHLFDFLQIGVEDEENKQEIMQVAILAARCLKLRGEERPSMKEVAMELEGIRLMDKHPWTNNTSQNFEERQYLLSEAQSIHEPGDSSGQQNAGYDSVRELQLIDFGDGR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01927 761 CDD STKc_IRAK 436 703 - -
Vian2g01927 761 FunFam Wall-associated receptor kinase 2 400 505 - -
Vian2g01927 761 ProSiteProfiles Protein kinase domain profile. 430 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01927 761 Pfam Wall-associated receptor kinase galacturonan-binding 37 90 IPR025287 GO:0030247
Vian2g01927 761 SMART serkin_6 430 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01927 761 CDD EGF_CA 303 337 - -
Vian2g01927 761 FunFam Fibrillin 2 298 342 - -
Vian2g01927 761 FunFam Wall-associated receptor kinase 2 506 723 - -
Vian2g01927 761 SMART egf_5 253 302 IPR000742 -
Vian2g01927 761 SMART egf_5 306 347 IPR000742 -
Vian2g01927 761 SUPERFAMILY Protein kinase-like (PK-like) 410 701 IPR011009 -
Vian2g01927 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Vian2g01927 761 Gene3D Phosphorylase Kinase; domain 1 397 505 - -
Vian2g01927 761 SUPERFAMILY EGF/Laminin 303 338 - -
Vian2g01927 761 Pfam Protein kinase domain 434 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01927 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 713 IPR045274 GO:0007166
Vian2g01927 761 Gene3D Transferase(Phosphotransferase) domain 1 506 725 - -
Vian2g01927 761 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Vian2g01927 761 Gene3D Laminin 254 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01927 Vian-Chr2 38541328 38543901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01927 12 761 Receptor kinase-like Gene Family AT1G21230 43.364 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian2g01927 Pkinase 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01927 - - gmx:100819535 1031.55