Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01915 ATGGAGAAGACGCTCCTCAAGGATTTCGAGCTCCAACACAAGAATCCCTCCGTCGAGGCTCTCCGTCGATGGAGATCCGCCGTCACTCTCGTCAAAAACCGCCGCCGCCGCTTCCGCATGGTCGCTGATCTCGACAAGCGCGACGAAGCTCAACAGATTAGGCAGGGAATCAAGCTACCGAGTGAAGTGAGAGAGGCTGGTTTTTGTATTCATCCGGAGGAGATTGCTTCTATTGTTCGTGGCCACGATAACAAGATCTTAAATAATATTGGTGGAGTTGAAGCCATTGCAAGGAAACTGTCAGTTTCAGTGGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCCGACAACAGATTTATGGATTCAATCGTTTTACAGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACATTGATCATTCTCATTGTTTGTGCTGTAGTTTCTTTAGGTGTAGGGATAGCCACTGAAGGGTGGCCAAGGGGAACGTATGATGGTGTGGGCATCATACTCAGTATATTCTTAGTAGTCACAGTTACAGCTGTCAGTGATTACAAGCAATACCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCACTAGGGATGGGAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCAGATGGACTTTTTATATCAGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTAAATGAAGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTATTAACGAGGGAGGAGAGGATGAGACCCCGTTGCAGGTTAAGTTAAACGGAGTTGCTACTATCATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTATTGATCATAAGGTTTCTGGTTGAAAAAGCACAAAATGGTGAGTTTGCCAACTGGTCTACGGCTGATGCACTGAAGTTACTAGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTGCCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCGAATGGTGGTTACTAAGACATGGATATGTGCAAAAGCAATGCAGATAACCGGTAACGAGAGTGCAGACGAACTGAAAACATGTACACCTGAAGGAGTTCAAAACATCCTTTTACAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGAACACAATATTGGGGACCCCAACAGAATCGGCATTATTGGAATTTGGCTGCCTTTTAGGTGCTGATTTTGATGCCTATGCGCAGCGTAAAATGTACAAGATACTCAAAGTTGAGCCTTTCAATTCAGTCCGAAAGAAAATGTCTGTGCTCGTGGGTCTTCCTGATGGAGGGGTCCGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAGATGTGTAACAAAATTATTGATTGCAATGGGGAAGTAGTTGATCTTCCCGAAGAGCATGCAAATAATGTCTTTCGTATTATAAATGATTTTGCTTCTGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGATATAAACGAAATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCATTAGTAGGAATCAAGGATCCTGTACGCCCTGGAGTTAAGGAAGCTGTTCAAATTTGTAAAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAAAGAATGCGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGTCCAACGTTTCGTGACCTTTCTTCCGAGGAAATGATGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGTATAACTTGGTAAACAATTTGAAGAGTATGTTTGGTGATGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCAGCACTTCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAATGCTGATGTCATTATCCTGGATGATAACTTCACGACTATTCTGAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATCCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAATTTCTTTTCTGCATGTATCACAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAACGATGGTCTTTTGGAAAGACCTCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGACAAAGCATATACCAATTAATTATCCTTGCGATTCTAAATTTTGACGGGGAGAGGCTCCTCGGAATTAGTGGTTCGGATGCAACAGAAGTTCTCAACACTCTGATATTCAACACCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATGTTGAAAAGATAAACGTATTCAGAGGCATGTTCGACAGCTGGATATTTTTGTCGATAATTTTCGCCACTGTGGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGGTACTGAGCGTGTTAATCGGAGCAGTTAGCATTCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATAACAGTAAGCAGCACCATGATGATTATGAGGCATTGCCATCTGGTCCCGAGGTGGCATAA 3033 0.4243 MEKTLLKDFELQHKNPSVEALRRWRSAVTLVKNRRRRFRMVADLDKRDEAQQIRQGIKLPSEVREAGFCIHPEEIASIVRGHDNKILNNIGGVEAIARKLSVSVDGGVSEESINSRQQIYGFNRFTEKPSRSFLMFVWDALQDLTLIILIVCAVVSLGVGIATEGWPRGTYDGVGIILSIFLVVTVTAVSDYKQYLQFRDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGLFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLIIRFLVEKAQNGEFANWSTADALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICAKAMQITGNESADELKTCTPEGVQNILLQAIFQNTSAEVVKDKDGKNTILGTPTESALLEFGCLLGADFDAYAQRKMYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCNKIIDCNGEVVDLPEEHANNVFRIINDFASEALRTLCLAFKDINEMHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQICKAAGITIRMVTGDNIHTAEAIAKECGILTEGGVAIEGPTFRDLSSEEMMDTIPRIQVMARSLPLDKYNLVNNLKSMFGDVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTILNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLERPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGERLLGISGSDATEVLNTLIFNTFVFCQVFNEINSRDVEKINVFRGMFDSWIFLSIIFATVAFQVVIVEFLGTFASTVPLNWQFWVLSVLIGAVSIPIAAILKCIPVERDNSKQHHDDYEALPSGPEVA 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01915 1010 PRINTS H+-transporting ATPase (proton pump) signature 584 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 PRINTS H+-transporting ATPase (proton pump) signature 727 743 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 PRINTS H+-transporting ATPase (proton pump) signature 759 784 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 FunFam Calcium-transporting ATPase 744 990 - -
Vian2g01915 1010 Pfam Cation transporting ATPase, C-terminus 812 985 IPR006068 -
Vian2g01915 1010 SFLD Haloacid Dehalogenase 406 779 - -
Vian2g01915 1010 Gene3D - 107 307 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 751 763 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Vian2g01915 1010 PRINTS P-type cation-transporting ATPase superfamily signature 727 746 - -
Vian2g01915 1010 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 988 IPR023298 -
Vian2g01915 1010 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vian2g01915 1010 Gene3D - 16 68 - -
Vian2g01915 1010 CDD P-type_ATPase_Ca_PMCA-like 113 860 - -
Vian2g01915 1010 SFLD p-type atpase 406 779 IPR044492 -
Vian2g01915 1010 Pfam Cation transporter/ATPase, N-terminus 91 156 IPR004014 -
Vian2g01915 1010 PANTHER CATION TRANSPORTING ATPASE 55 988 - -
Vian2g01915 1010 Pfam haloacid dehalogenase-like hydrolase 422 741 - -
Vian2g01915 1010 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 430 636 IPR023299 GO:0000166
Vian2g01915 1010 FunFam Calcium-transporting ATPase 624 772 - -
Vian2g01915 1010 NCBIfam HAD-IC family P-type ATPase 520 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 NCBIfam HAD-IC family P-type ATPase 365 446 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 NCBIfam HAD-IC family P-type ATPase 176 346 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 NCBIfam HAD-IC family P-type ATPase 698 814 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01915 1010 FunFam Calcium-transporting ATPase 186 307 - -
Vian2g01915 1010 SUPERFAMILY HAD-like 423 832 IPR036412 -
Vian2g01915 1010 FunFam Calcium-transporting ATPase 434 631 - -
Vian2g01915 1010 Pfam E1-E2 ATPase 209 402 - -
Vian2g01915 1010 Gene3D - 139 986 - -
Vian2g01915 1010 Gene3D - 421 772 IPR023214 -
Vian2g01915 1010 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Vian2g01915 1010 SMART Cation_ATPase_N_a_2 89 161 IPR004014 -
Vian2g01915 1010 Gene3D - 434 631 IPR023299 GO:0000166
Vian2g01915 1010 SUPERFAMILY Calcium ATPase, transduction domain A 209 305 IPR008250 -
Vian2g01915 1010 NCBIfam calcium-translocating P-type ATPase, PMCA-type 84 989 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01915 Vian-Chr2 38229812 38240711 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01915 54 1007 Primary Pumps ATPases AT3G57330 71.803 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01915 K01537 - gmx:100783489 1760.35