Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01912 ATGGTTGTTGTAACAAATGCTTATGATGACAATATACCCAAACAAGTGGCTGGTATTGGACAAAATGGTGTAGGCATAGCCACTGAAGGGTGGCCAAGGGGAACGTATGATGGTGTGGGCATCATACTCAGTATATTCTTAGTAGTCACAGTTACAGCTGTCAGTGATTACAAGCAATACCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCACTAGGGATGGGAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCAGATGGACTTTTTATATCAGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTAAATGAAGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTATTAACGAGGGAGGAGAGGACGAGACCCCGTTGCAGGTTAAGTTAAACGGAGTTGCTACTATCATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTATTGATCATAAGGTTTCTGGTTGAAAAAGCACAAAATGGTGAGTTTGCCAACTGGTCTACGGCTGATGCACTGAAGTTACTAGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTGCCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCGAATGGTGGTTACTAAGACATGGATATGCGCAAAAGCAATGCAGATAACAGGTAACGAGAGTGCAGACGAACTGAAAACATGTACACCTGAAGGAGTTCAAAACATCCTTTCACAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGAACACAATATTGGGGACCCCAACAGAATCGGCATTATTGGAATTTGGCTGCCTTTTAGGTGCTGATTTTGATGCCTATGCGCAGCGTAAAATGTACAAGATACTCAAAGTTGAGCCTTTCAATTCAGTCCGAAAGAAAATGTCTGTGCTCGTGGGTCTTCCTGATGGAGGGGTCCGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAGATGTGTAACAAAATTATTGATTGCAATGGGGAAGTAGTTGATCTTCCCGAAGAGCATGCAAATAATGTCTTTCGTATTATAAATGATTTTGCTTCTGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGATATAAACGAAATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCATTAGTAGGAATCAAGGATCCTGTACGCCCTGGAGTTAAGGAAGCTGTTCAAATTTGTAAAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAAAGAATTCGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGTCCAACGTTTCGTGACCTTTCTTCCGAGGAAATGATGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGTATAACTTGGTAAGCAATTTGAAGAGTATGTTTGGTGATGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCAGCACTTCGTGAAGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAATGCTGATGTCATTATCCTGGATGATAACTTCACGACTATTCTGAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATCCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAATTTCTTTTCTGCATGTATCACAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAACGATGGTCTTTTGGAAAGACCTCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGACAAAGCATATACCAATTAATTATCCTTGCGATTCTAAATTTTGACGGGGAGAGGCTCCTCGGAATTAGTGGTTCGGATGCAACAGAAGTTCTCAACACTCTGATATTCAACACCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATATTGAAAAGATAAACGTATTCAGAGGCATGTTCGACAGCTGGATATTTTTGTCGATAATTTTCGCCACTGTGGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGGTACTGAGCGTGTTAATCGGAGCAGTTAGCATTCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATAACAGTAAGCAGCACCATGATGGTTATGAGGCATTGCCATCTGGTCCCCAGCAGGCATAA 2628 0.4148 MVVVTNAYDDNIPKQVAGIGQNGVGIATEGWPRGTYDGVGIILSIFLVVTVTAVSDYKQYLQFRDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGLFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLIIRFLVEKAQNGEFANWSTADALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICAKAMQITGNESADELKTCTPEGVQNILSQAIFQNTSAEVVKDKDGKNTILGTPTESALLEFGCLLGADFDAYAQRKMYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCNKIIDCNGEVVDLPEEHANNVFRIINDFASEALRTLCLAFKDINEMHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQICKAAGITIRMVTGDNIHTAEAIAKEFGILTEGGVAIEGPTFRDLSSEEMMDTIPRIQVMARSLPLDKYNLVSNLKSMFGDVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTILNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLERPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGERLLGISGSDATEVLNTLIFNTFVFCQVFNEINSRDIEKINVFRGMFDSWIFLSIIFATVAFQVVIVEFLGTFASTVPLNWQFWVLSVLIGAVSIPIAAILKCIPVERDNSKQHHDGYEALPSGPQQA 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01912 875 Pfam E1-E2 ATPase 74 267 - -
Vian2g01912 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 291 297 IPR018303 -
Vian2g01912 875 NCBIfam calcium-translocating P-type ATPase, PMCA-type 4 854 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian2g01912 875 Gene3D - 60 172 - -
Vian2g01912 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 853 IPR023298 -
Vian2g01912 875 CDD P-type_ATPase_Ca_PMCA-like 16 725 - -
Vian2g01912 875 NCBIfam HAD-IC family P-type ATPase 230 311 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 NCBIfam HAD-IC family P-type ATPase 41 211 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 NCBIfam HAD-IC family P-type ATPase 385 537 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 NCBIfam HAD-IC family P-type ATPase 563 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 Gene3D - 37 851 - -
Vian2g01912 875 Pfam haloacid dehalogenase-like hydrolase 287 606 - -
Vian2g01912 875 FunFam Calcium-transporting ATPase 51 172 - -
Vian2g01912 875 FunFam Calcium-transporting ATPase 299 496 - -
Vian2g01912 875 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 295 501 IPR023299 GO:0000166
Vian2g01912 875 Gene3D - 299 496 IPR023299 GO:0000166
Vian2g01912 875 SFLD p-type atpase 271 644 IPR044492 -
Vian2g01912 875 Gene3D - 286 637 IPR023214 -
Vian2g01912 875 SUPERFAMILY Calcium ATPase, transduction domain A 74 170 IPR008250 -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 120 134 - -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 289 303 - -
Vian2g01912 875 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Vian2g01912 875 PANTHER CATION TRANSPORTING ATPASE 21 853 - -
Vian2g01912 875 SUPERFAMILY HAD-like 288 697 IPR036412 -
Vian2g01912 875 FunFam Calcium-transporting ATPase 489 637 - -
Vian2g01912 875 FunFam Calcium-transporting ATPase 609 855 - -
Vian2g01912 875 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01912 875 Pfam Cation transporting ATPase, C-terminus 677 850 IPR006068 -
Vian2g01912 875 SFLD C1.7: P-type atpase like 271 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01912 Vian-Chr2 38202166 38206729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01912 23 875 Primary Pumps ATPases AT2G41560 74.091 0.0 1295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01912 K01537 - gmx:100783489 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01912 2 38202166 38206729 Vian2g01912 2 38202166 38206729 ECH