Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01893 ATGGCATCGGTGCGTGAAGCTCCGTCGTGGAAATTCCACGTGTTTCTGAGCTTCAGAGGAGAAGACACACGCAACGGTTTTACGGACCACCTCTACGCTGCGTTCAGGGGACGCGGCTTTGCCGTTTTCAAAGACGACGAAGAGCTGGAGAGAGGAGAAGTCATCTCGGAGGCGCTTCTGAAGGCGATCGACGAGTCTCTGTGTTCCGTGGTGGTTCTCTCGCCGCACTACGCCTCTTCGCGGTGGTGCTTGGACGAGCTCCTCAGGATACTGGAATCGCGAGCAAATTTCGGTCGCAACGTTCTGCCGATCTTCTACAACGTGGATCCCGCAGACGTAAGGCATCAACGAGGAACTTTCGCCGAAGCTTTTGCGAAGCATGGAGAGAGGTTTGGGAGCGATGAGGTTCGGATGTGGAGACAAGCGTTGAAGGACGTCGCGGCTTTGTCTGGCTGGACCTCTAAGGATACGCGTGAAACAGAACTCATTGAAGAAATTGTTGCAGATGTGTGGGAAAAGTTACAAACTAAATTGCCATCCTATGATGATGAACTGGTTGGAATTGATTCTAGGATAAACAGCATTTATGCATTTTTAAGAACGGATTCACAGGAAGTTCGCTTTATGAGCATTTGGGGCATGGGTGGTATTGGAAAGACAACATTAGCCAGGTTTGTCTATAATAAAATCCATGACCAATATGATATTTCTTGCTTTCTTGAGAATGTTAGAGAGGTTTCTAGTGAAAGAGATGGTCTGCTTTGCTTACAAAGAAAATTGCTTTCCCATTTAAAAATAAGAAGCATGAGAATTGAAAGTTTAGACCAAGGAAAGGAGACAATACGGAATCTTTTATTCAATAAGAAAGTTCTTCTTGTCCTCGATGATTTAAGTTCTGATATCCAAGTAGAGAATTTAGCTGGGAAGCCAGAATGGTTTGGTCAAGGGAGTAGAGTAATTATAACAACTAGAGATAAGCATCAACTTAAATCACTTCATGTGTGTGAGAACTATGATGTTCAGGTCTTGAATAATTATGAATCCCTTCAACTTTTTTGCCAAAAAGCGTTTAGAGGAGAAAAGCCTGAAGAAGCTTACTTAGAGTTGTCTAGATCTGTGGTTCAATATGCTGGAGGTGTTCCTTTGGCACTCAAAGTGTTGGGTTCATTTCTCTGTGGAAGAAGTGCTTCCGTATGGGAAGACGCTTTGAAAATGTTAAGGAAGGATGCACAAAATGATATTTGCAAGACTCTAAGAATAAGTTATGATGGATTACGAGATAACGAGAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAAGGAAACACCAAAGATGATGTAACACGAATATTGGAAAATTGTGATTTCAATCCACTGATTGGTATAGAAGTTCTAATTGAAAAATCATTAGTAACTTGTGATGGATTGCATTTGGGGATGCACGATTTGCTTCAGGAAATGGGTAGGAATATTGTTTTCCAAGAATCTCCTAATGATGCCAGCAAGAGGAGTAGGCTGTGGACACTCAAGGACGTTGATCAAGTATTGAGAAATAATAATGGAACCGAATCCATTCAAGCTATAGTTTTAAATTTGCCTGAGCCTTATGAAGCATGTTGGAATCCGGACGCTTTTTCAAAGATGAGTAATCTTAGAATGCTCATGATATTGAATAAATTGCAACTTCCGCTTGGTCTCAAATGTCTTCCCAGTAGATTAAAAGTTCTTATATGGAAGGAATATCCTCTTGAATCCCTGCCTGTTGGAGCCCAACTCGATGAACTTGTTGAGCTTCATATGTGTCAAAGCAAAATAAAGCACCTTTGGGGGGGGAACAAAGGTAACATTTCCATTCAATATCTGTTTCTGGAAAATTTGAAGATCGTCAATTTGAGAAATTGCACAAACGTACACAGAACTCCAGATTTCACTGGAATTCCAAATCTTGAAAAATTGGATCTTGAAGGCTGTGTAAACCTAGTTGAGGTTCATGCATCTCTTGGACTTCTTAAAAAGCTTTCGTACCTGACATTTGAAGATTGCAAAAATCTCAAAATCCTTCCTAGAAAACTGTTATTAGATTCTTTAAAACGTCTAGTTCTTTCAGGCTGCTCCGCAGTTAGAAAGCTTCCTGAGTTTGGAGAAAGTATGAAAAGTCTATCCGAGCTTGCTTTAGAGGAGACTTCCATAGCTGAACTACCCGTGTCTGTTGGTCACTTGACAGGTCTTACTAACTTGCTTTTAAAGGGTTGCAAAAATATTGTTTGCCTTCCAAATACCATTTCTAATTTGAAATCTCTCAAAAGGCTCAATATCTCTGGTTGTTCAAAAATTTCTAAACTACCTGATAATTTGAATGAAAATGAGGCTTTGGAATTTTTAAATGCAAGCGAAACTGCTATTAGGGAATTGCCTTCATCCATTGTTCTTCTAAAAAATCTCAGACTGCTTTTACTTCGTGGGTGCAAAGACTTAGCATCAAACTCATGGAGCTCACTTCTTCTCCCTTTTGAGAACATTCTCAGGTTTAATAGTCATCCAACACCAAAGAGATTGATCTTGCCTTCTTTTTCTGGTCTATCCTCATTGAGGAAACTGGACTTGAGTTATTGCAATCTCCATGATGGATCAATTCCTGAAGATCTTGGCTGCTTATCATCATTGGTAACGTTAGATCTAAGTGGAAACAATTTTGTATGCTTTCCTGGTAGCATCTCTGAACTTTTGAAGCTAGAAAGACTATTATTGAAGTGCTGCCCGAGGCTGGAGTCATTTCCTAAGCTGCCACCAGAAGTACATTATGTAAATGCAAGTGATTGTGGTTCAATGAAACCTTTATCAGATCCGCAACAGATATGGGGTCATTTGGCATCATTTGCCTTTGATAAGTTGCAAGATGCCAGTAACTTTAGAACCTTATTGGTAAGTCCAGGAAACGAAATTCCATCATTTTTTTTCTATCAAAAACATCTCAACCAGGTCCAAGACATAGAATACTTGAAAGAAAACTACATCTGGGCCGACTCTACTGTGTCAATACCGATGGACTTAGCTCAACTTCGTCACCGGTATCATAGAAGTGAATGGTGGGGAATTTTGGTTTCCCTAGTTGTAGAAGATGTGGAGTCTTCACCTTCACAGGAATATCGCATTGGTTGGATTTCAAAGGTTCCTAGTTTCAAAAATATTTTGCAGCAGCTGTGTCACAAGACGGAGCAGGGATTCATCTCTGGAATGCATAATCATAAATATCCTCACCTGTTGATTTTATATATTCCGGTTCATAGGGCTCGCTCGTTTTATGTTCATGACAAGTTTCAACTAATATTTTATTGTTCTAGTCTCAAGAGCAAATTAGTGATAAAGAAATGTGGACGGCACATATTAAGTAAGGAAGATGCTGAAAACTGGCGCACAAAACTGTCTGAATGGAACACTAATTCCACCAATCAATGTGTTGAAAATCCAAGGGACTGCCGCTTATCTCCACACTTTTCATCCTGGAGATGGATATCCTGTCTCATGGTTCCCCAACACTGCAAGACTTTCCTCTTGGCCATCCTCTGTGATCGCTTGCCTGCTAATGAAAGGTGCTCATTCTGCTGCTTGGAAGGAACTGTCATCCATGTTTTACGAGACTGTACCAGAGCTACTGCAATATGGGTTCAAATGGTTCCTCCTGAGGTGTGTGATGAGTTTTTTTCAACATCTCTTCATGACTGGATGCACAGGTTCCTTCTGAAGCTCTGGTTTCCCGACAGGGACTATTATGCTGACTGTTTGAGGTTTACCATCACGATCTGGCTACTTTGGAAGGATAGAAATAGGTCCATCTTCAAGCGAAATTCTCCAACAGATAATGATGGGTTGTATTCAATGATTCAGTCTCTAGTAAAAGAATATTCAATTCTTTTGCATCTGAAAGGGGAAGAGGGTACTTCTGCTGTGAATTCTGTCTCACAGAACTCACGTCTAAAACTTTTTGTCAGGCTGAACGTTGATGGCTGTTGTAATGGCAATCCTGGAAATGCTGGTTATGGGGGTCTCTTTCGTGACGTAGAGGGAAAGTGGCTTGGTGGGTTTTATGGATCTCTTGGCCTTGCAACGAATGTGAAAGCTGAGCTTTATGCCATTTGTCAGGGTTTGATCGCAGCTTGGGATTTGGGTTACCGAACCGTGCTGGTTGAAACTGATTCATTAGAAGCAATAAATCTCATTAAGGAGGCCAATATTGAGGATTGTGCCTATGGTGGCTTGCTTGCTGACATACGTTCCCTCATGCAAAGAAATTGGTCCTTGGACTTGATCCATTCTCTTAGACAAGATAATGCATGTGCAGACATGTTATCAAAGCTGGGAACTGAGCAGCATGAGGTCTATTGCTTTCTGGCCCATCCACCTCAGCAGCTTCAACTGGCATTGGTGGCTGATGCCCTGCAAGTTCAACTTCCTTGCCTCTAG 4464 0.4115 MASVREAPSWKFHVFLSFRGEDTRNGFTDHLYAAFRGRGFAVFKDDEELERGEVISEALLKAIDESLCSVVVLSPHYASSRWCLDELLRILESRANFGRNVLPIFYNVDPADVRHQRGTFAEAFAKHGERFGSDEVRMWRQALKDVAALSGWTSKDTRETELIEEIVADVWEKLQTKLPSYDDELVGIDSRINSIYAFLRTDSQEVRFMSIWGMGGIGKTTLARFVYNKIHDQYDISCFLENVREVSSERDGLLCLQRKLLSHLKIRSMRIESLDQGKETIRNLLFNKKVLLVLDDLSSDIQVENLAGKPEWFGQGSRVIITTRDKHQLKSLHVCENYDVQVLNNYESLQLFCQKAFRGEKPEEAYLELSRSVVQYAGGVPLALKVLGSFLCGRSASVWEDALKMLRKDAQNDICKTLRISYDGLRDNEKAIFLDIACFFKGNTKDDVTRILENCDFNPLIGIEVLIEKSLVTCDGLHLGMHDLLQEMGRNIVFQESPNDASKRSRLWTLKDVDQVLRNNNGTESIQAIVLNLPEPYEACWNPDAFSKMSNLRMLMILNKLQLPLGLKCLPSRLKVLIWKEYPLESLPVGAQLDELVELHMCQSKIKHLWGGNKGNISIQYLFLENLKIVNLRNCTNVHRTPDFTGIPNLEKLDLEGCVNLVEVHASLGLLKKLSYLTFEDCKNLKILPRKLLLDSLKRLVLSGCSAVRKLPEFGESMKSLSELALEETSIAELPVSVGHLTGLTNLLLKGCKNIVCLPNTISNLKSLKRLNISGCSKISKLPDNLNENEALEFLNASETAIRELPSSIVLLKNLRLLLLRGCKDLASNSWSSLLLPFENILRFNSHPTPKRLILPSFSGLSSLRKLDLSYCNLHDGSIPEDLGCLSSLVTLDLSGNNFVCFPGSISELLKLERLLLKCCPRLESFPKLPPEVHYVNASDCGSMKPLSDPQQIWGHLASFAFDKLQDASNFRTLLVSPGNEIPSFFFYQKHLNQVQDIEYLKENYIWADSTVSIPMDLAQLRHRYHRSEWWGILVSLVVEDVESSPSQEYRIGWISKVPSFKNILQQLCHKTEQGFISGMHNHKYPHLLILYIPVHRARSFYVHDKFQLIFYCSSLKSKLVIKKCGRHILSKEDAENWRTKLSEWNTNSTNQCVENPRDCRLSPHFSSWRWISCLMVPQHCKTFLLAILCDRLPANERCSFCCLEGTVIHVLRDCTRATAIWVQMVPPEVCDEFFSTSLHDWMHRFLLKLWFPDRDYYADCLRFTITIWLLWKDRNRSIFKRNSPTDNDGLYSMIQSLVKEYSILLHLKGEEGTSAVNSVSQNSRLKLFVRLNVDGCCNGNPGNAGYGGLFRDVEGKWLGGFYGSLGLATNVKAELYAICQGLIAAWDLGYRTVLVETDSLEAINLIKEANIEDCAYGGLLADIRSLMQRNWSLDLIHSLRQDNACADMLSKLGTEQHEVYCFLAHPPQQLQLALVADALQVQLPCL 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01893 1487 SUPERFAMILY L domain-like 853 945 - -
Vian2g01893 1487 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Vian2g01893 1487 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 714 IPR044974 GO:0006952
Vian2g01893 1487 SUPERFAMILY L domain-like 481 840 - -
Vian2g01893 1487 Gene3D - 176 339 IPR027417 -
Vian2g01893 1487 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
Vian2g01893 1487 Pfam TIR domain 11 186 IPR000157 GO:0007165
Vian2g01893 1487 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Vian2g01893 1487 Gene3D - 1329 1457 IPR036397 GO:0003676
Vian2g01893 1487 ProSiteProfiles RNase H type-1 domain profile. 1326 1456 IPR002156 GO:0003676|GO:0004523
Vian2g01893 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 436 IPR027417 -
Vian2g01893 1487 Gene3D Ribonuclease Inhibitor 505 711 IPR032675 -
Vian2g01893 1487 SMART till_3 11 149 IPR000157 GO:0007165
Vian2g01893 1487 CDD RNase_H_like 1332 1452 IPR044730 -
Vian2g01893 1487 SUPERFAMILY Ribonuclease H-like 1330 1458 IPR012337 -
Vian2g01893 1487 Gene3D - 342 426 IPR042197 -
Vian2g01893 1487 Pfam Reverse transcriptase-like 1333 1452 IPR002156 GO:0003676|GO:0004523
Vian2g01893 1487 Gene3D Ribonuclease Inhibitor 712 980 IPR032675 -
Vian2g01893 1487 PRINTS Disease resistance protein signature 284 298 - -
Vian2g01893 1487 PRINTS Disease resistance protein signature 377 391 - -
Vian2g01893 1487 PRINTS Disease resistance protein signature 763 779 - -
Vian2g01893 1487 PRINTS Disease resistance protein signature 208 223 - -
Vian2g01893 1487 Pfam NB-ARC domain 192 419 IPR002182 GO:0043531
Vian2g01893 1487 Gene3D - 6 175 IPR035897 -
Vian2g01893 1487 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 176 - -
Vian2g01893 1487 SMART LRR_typ_2 861 885 IPR003591 -
Vian2g01893 1487 SMART LRR_typ_2 765 789 IPR003591 -
Vian2g01893 1487 SMART LRR_typ_2 718 741 IPR003591 -
Vian2g01893 1487 SMART LRR_typ_2 886 909 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01893 Vian-Chr2 37931779 37939385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01893 5 820 WRKY Transcription Factor Family AT4G12020 33.655 3.34e-108 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01893 - - var:108321227 2917.87