Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01888 ATGAGAGGCTTCACAGAAGCAAAACAGCTTGGTCCAACTTTCATTAAACTTGGTCAGTTGTCATCAACAAGGTCGGATCTGTTTCCACGTGAATTTGTGGATGAGCTCGTAAAATTGCAGGACATGGTTCCTGCCTTCTCTCGTGAGAAAGCAAGAAAATTTATTGAGAGTGAATTAGGAGCTTCCATTGACATGTTATTTAAAGAGTTTGAAGATCGACCAATTGCCTCTGCTAGTCTCGGTCAGGTTCATCGTGCTATTCTGCATAATGGAGAAAAAGTAGTAGTCAAAGTTCAAAGGCCAGGTCTGAAGAAGCTTTTCGACATTGATTTGAAAAACTTAAAACTGATCGCAGAGTATTTCCAGAGAAATGAAGCTTTTGGGGGTCCACTCAGAGATTGGATTGGAATATATGAAGAATGTGCAACAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCACAGAAACAAAAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTCAAAGCACTGTCAAGCACCCATCTCTATGGGAGACATCTGGTAAAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCTAGCACGAACAGCTTCTCAATTTAGTGACAACAACAATGGATTTCAAGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAA 912 0.4013 MRGFTEAKQLGPTFIKLGQLSSTRSDLFPREFVDELVKLQDMVPAFSREKARKFIESELGASIDMLFKEFEDRPIASASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLKNLKLIAEYFQRNEAFGGPLRDWIGIYEECATDLQGTVLDSHALILQPCHVKNDAQKQKTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVKRAKEGESLEELLARTASQFSDNNNGFQAIKLSKKRKDVDILDEGKMKFGRFDD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01888 303 CDD RRM6_RBM19_RRM5_MRD1 179 249 - -
Vian2g01888 303 Pfam ABC1 atypical kinase-like domain 38 143 IPR004147 -
Vian2g01888 303 SUPERFAMILY Protein kinase-like (PK-like) 40 121 IPR011009 -
Vian2g01888 303 FunFam Multiple RNA-binding domain-containing protein 1 173 278 - -
Vian2g01888 303 SUPERFAMILY RNA-binding domain, RBD 166 248 IPR035979 GO:0003676
Vian2g01888 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 248 IPR000504 GO:0003723
Vian2g01888 303 Gene3D - 170 275 IPR012677 -
Vian2g01888 303 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 9 145 - -
Vian2g01888 303 SMART rrm1_1 180 251 IPR000504 GO:0003723
Vian2g01888 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01888 Vian-Chr2 37882526 37885116 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01888 181 248 Eukaryotic Initiation Factors Gene Family AT3G16380 38.235 2.44e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01888 - K14787 gmx:100796243 274.248