Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01884 ATGGAAGCTGAAAGGGTTGAATTGCTTAGTGTTGTTGAGGATCATTATGGAGGAGTTGTCGTAAGCTTGGAGAATCAGGAGCCTGTGGATTCTGAGCTCTTCTTCAATGAACATATTGGAAGCTTCAATGAACAATTGGAAGCAACAGAGAAAGAAAGGGTCTGGCTCAAATTGCCCATACTGCATTCAAATCTTGTTCATACTGCTGTCAAGTGGATGCCAGTTGAAGATTATGCTGCACAGCCTTTTGTGCAAGAACATGAACAATTTGACTTTGTTGCAAAAATATGTTCTTCAAAGTTGGATGGCAACTACACCGGTTTTTCTAACGTGCCTACTTGTACTTCATCTGGCAAAAAAACCTATCTGTATCTTAGCAACAGGGAAGCCAGCCTTTTAATTCGGATTCTGTTGGACAACTCAAAATGGGCATATATGAGAGGCATCACAGAAGCAAAACAGCTTGGTCCAACTTTCATTAAACTTGGTCAGTTGTCATCAACAAGGTCGGATCTGTTTCCACGTGAATTTGTGGATGAGCTCGTAAAATTGCAGGACATGGTTCCTGCCTTCTCTCCTGAGAAAGCAAGAAAATTTATTGAGAGTGAATTAGGAGCTTCCATTGACATGTTATTTAAAGAGTTTGAAGATCGACCAATTGCCGCTGCTAGTCTCGGTCAGGTTCATCGTGCTATTCTGCATAATGGAGAAAAAGTAGTAGTCAAAGTTCAAAGGCCAGGTCTGAAGAAGCTTTTCGACATTGATTTGAGTAAGTTGTGCTCATTTTGTTTCGTGAAGAAACATTTGAAAAATGGGAAAATTGTTTCTATGGGGTTTGGATTCATTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCACAGAAACAAAAGACAATTGAGAAGGATAAGAGTTCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAAAGTATGTTAATCAGCAGGAGGCACAAAATGCTCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTGATAGAGAGAGCGAAAGAAGGTGAAAGTTTGGAAGAAGTGCCATCACGAACAGCTTCTCAATTTAGTGACAACCACAGTGGATTTCAAGCTATTGAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGAGAAGATGAAGTTTGGAAGATTTGATGACTAA 1335 0.4022 MEAERVELLSVVEDHYGGVVVSLENQEPVDSELFFNEHIGSFNEQLEATEKERVWLKLPILHSNLVHTAVKWMPVEDYAAQPFVQEHEQFDFVAKICSSKLDGNYTGFSNVPTCTSSGKKTYLYLSNREASLLIRILLDNSKWAYMRGITEAKQLGPTFIKLGQLSSTRSDLFPREFVDELVKLQDMVPAFSPEKARKFIESELGASIDMLFKEFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLSKLCSFCFVKKHLKNGKIVSMGFGFIEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDAQKQKTIEKDKSSTEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVKYVNQQEAQNALKALSSTHLYGRHLVIERAKEGESLEEVPSRTASQFSDNHSGFQAIELSKKRKDVDILDEEKMKFGRFDD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01884 444 SMART rrm1_1 311 391 IPR000504 GO:0003723
Vian2g01884 444 SMART rrm1_1 240 310 IPR000504 GO:0003723
Vian2g01884 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 307 IPR000504 GO:0003723
Vian2g01884 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 388 IPR000504 GO:0003723
Vian2g01884 444 Gene3D - 257 328 IPR012677 -
Vian2g01884 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 395 IPR000504 GO:0003723
Vian2g01884 444 SUPERFAMILY RNA-binding domain, RBD 328 411 IPR035979 GO:0003676
Vian2g01884 444 CDD RRM6_RBM19_RRM5_MRD1 330 393 - -
Vian2g01884 444 SUPERFAMILY RNA-binding domain, RBD 263 320 IPR035979 GO:0003676
Vian2g01884 444 Gene3D - 6 93 - -
Vian2g01884 444 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 153 264 - -
Vian2g01884 444 Pfam Nudix hydrolase domain 9 71 IPR040618 -
Vian2g01884 444 SUPERFAMILY Protein kinase-like (PK-like) 185 249 IPR011009 -
Vian2g01884 444 Pfam ABC1 atypical kinase-like domain 183 263 IPR004147 -
Vian2g01884 444 Gene3D - 329 416 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01884 Vian-Chr2 37753787 37758082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01884 269 397 Eukaryotic Initiation Factors Gene Family AT3G16380 26.490 8.67e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01884 K14787 - var:108322517 362.844