Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01864 ATGGTCGCATTGTTCTCTCCTATCTTCTCACCCAAAGGCTGGCTCTTAGAGGAGGAGCCATTGGCCTATAATAATAGCCATAACCTCTTCTACAAAGATGATGCGTCTTCTGAGTACTCCTTTCCCTATCACTTTTATTCACCACAGACACAGATTGAGCTTGAAGAAAGGTCTATTGCACCATCCTCTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGTGATCGCCGTAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACGAAAAAAATGAGCATCCCTGCAACAGTTTCTAGAGTCTTGAAATACATACCTGAACTACAACAGCAAGTGCAAGCACTAACAAAAAGGAAAGAGGAGCTTCTAGGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCATAGGAAAATTTCCCACCACAACTCTTCTTTTGTTGTCTCAACAACTAGGCTTAACGAATGTGAAGCTGTAGTTCACATTTCATGTCATGAGACCCACAAGGCTCCACTATCAGAGATCCTGCAGTGTTTAGAAAATGATGGTCTTTTTCTGCTAGATGCTTCTTCCTCAGAAACCTTTGGAGGAAGGTTCTTCTACAATTTGCATTTTCAGGTGGAGAAAACTAATAGATTAGCGCCCGAGATATTAACAGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTCTAA 747 0.4177 MVALFSPIFSPKGWLLEEEPLAYNNSHNLFYKDDASSEYSFPYHFYSPQTQIELEERSIAPSSDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPMADQTKKMSIPATVSRVLKYIPELQQQVQALTKRKEELLGRISRQLQGDAVNKESHRKISHHNSSFVVSTTRLNECEAVVHISCHETHKAPLSEILQCLENDGLFLLDASSSETFGGRFFYNLHFQVEKTNRLAPEILTEKLLPIYEKQRIF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01864 248 FunFam Transcription factor ORG2 64 149 - -
Vian2g01864 248 Coils Coil 117 137 - -
Vian2g01864 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Vian2g01864 248 Gene3D - 62 158 IPR036638 GO:0046983
Vian2g01864 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
Vian2g01864 248 SMART finulus 74 126 IPR011598 GO:0046983
Vian2g01864 248 CDD bHLH_AtORG2_like 69 142 - -
Vian2g01864 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 66 227 - -
Vian2g01864 248 Pfam Helix-loop-helix DNA-binding domain 69 121 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01864 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.833 7.45e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g01864 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01864 - - gmx:100803424 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01864 2 37466566 37468459 Vian2g01864 2 37466566 37468459 ECH