Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01858 ATGGGGATGGCTGCAGCAGAGTCGCAGTTTCATGTGTTGGCTGTTGATGACAGCATCATAGATAGGAAACTCATCGAGAGGCTCCTCAGAACCTCTTCCTACCAAGTTACTACGGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGGTTGCGTGAGAATGAAAACACCAACCCAAGCACGCCATCTGTTTCTCCCAACAACAACCATCAGGAGGTGGAGGTGAATCTTGTGATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCGTCTGAGAATGTGCCTTCAAGGATTAGCAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAAGCTTAAACCCCACATGAAGAAAACTAAGTTGAAAGATCAAAGGCAAGTAACAGCAGAAGAGATTGAAAACTCAGAAGTTCTACAGCAACAGACACAGCAAATTCTCCAAAATGACCAGCAACAAGCACCAAAACCGCAAGATCCTCGACCAGAGTCAGAGTCACGTCCACAACCAACTATAGAACAACAGCAACAATCACTACAACAAGCCAACAATAATAACAAGAGGAAGACCATGGAACAGGGGCTTTCACCTGAGACTGACAGAACAAGACCAAGATACAGCGGCATAGCTACTGTTGTATGA 732 0.444 MGMAAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENENTNPSTPSVSPNNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDQRQVTAEEIENSEVLQQQTQQILQNDQQQAPKPQDPRPESESRPQPTIEQQQQSLQQANNNNKRKTMEQGLSPETDRTRPRYSGIATVV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01858 243 Gene3D - 11 233 - -
Vian2g01858 243 ProSiteProfiles Response regulatory domain profile. 11 148 IPR001789 GO:0000160
Vian2g01858 243 Pfam Response regulator receiver domain 12 142 IPR001789 GO:0000160
Vian2g01858 243 SUPERFAMILY CheY-like 9 152 IPR011006 -
Vian2g01858 243 Coils Coil 202 222 - -
Vian2g01858 243 CDD REC_typeA_ARR 12 143 - -
Vian2g01858 243 SMART REC_2 10 144 IPR001789 GO:0000160
Vian2g01858 243 MobiDBLite consensus disorder prediction 168 243 - -
Vian2g01858 243 MobiDBLite consensus disorder prediction 168 222 - -
Vian2g01858 243 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 215 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01858 Vian-Chr2 37393969 37395520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01858 1 243 Response Regulator Gene Family AT3G57040 62.705 2.76e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian2g01858 Response_reg 1.5e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01858 K14492 - gmx:100788079 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01858 2 37393969 37395520 Vian2g01858 2 37393969 37395520 ECH