Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01842 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAAGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACACACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAATTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGATGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1383 0.4577 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIITSDINLSAAIAGSQTLALQKDTQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01842 460 Pfam Basic region leucine zipper 171 217 IPR004827 GO:0003700|GO:0006355
Vian2g01842 460 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Vian2g01842 460 CDD bZIP_HBP1b-like 175 227 - -
Vian2g01842 460 MobiDBLite consensus disorder prediction 146 177 - -
Vian2g01842 460 MobiDBLite consensus disorder prediction 1 32 - -
Vian2g01842 460 Coils Coil 194 221 - -
Vian2g01842 460 MobiDBLite consensus disorder prediction 118 177 - -
Vian2g01842 460 MobiDBLite consensus disorder prediction 118 145 - -
Vian2g01842 460 FunFam BZIP family transcription factor 174 223 - -
Vian2g01842 460 MobiDBLite consensus disorder prediction 1 19 - -
Vian2g01842 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Vian2g01842 460 PANTHER TRANSCRIPTION FACTOR TGA9 126 460 - -
Vian2g01842 460 ProSiteProfiles DOG1 domain profile. 240 457 IPR025422 GO:0006351|GO:0043565
Vian2g01842 460 SMART brlzneu 171 234 IPR004827 GO:0003700|GO:0006355
Vian2g01842 460 Gene3D - 174 226 - -
Vian2g01842 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Vian2g01842 460 Pfam Seed dormancy control 258 333 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01842 Vian-Chr2 37062720 37067839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01842 138 460 bZIP Transcription Factor Family AT3G12250 75.529 1.86e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian2g01842 DOG1 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01842 K14431 - gmx:778136 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01842 2 37062720 37067839 Vian2g01842 2 37062720 37067839 ECH