LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g01824	ATGGCAAAGCGTTTGATTCCACTGTTCAATCGTGTTTTGGTGGAGAAAATCGTGCCTCCATCAAAGACCAATGCTGGCATTTTGTTACCAGAGAAATCCTCCAAGCTGAATTCCGGGAAAGTTATTGCTGTTGGCCCTGGCATTCATAGTAAGGATGGGAAGCTAATTCCAGTGGCTGTAAATGAAGGTGACACTGTTCTTTTGCCTGAGTATGGGGGAACTGAGGTGAAGCTTGACAACAAAGAGTATCATCTTTATAGAGACGACGATATTCTCGGGACACTGCACGATTGA	294	0.4456	MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGIHSKDGKLIPVAVNEGDTVLLPEYGGTEVKLDNKEYHLYRDDDILGTLHD	97

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g01824	97	Gene3D	GroES chaperonin	1	97	IPR037124	GO:0006457
	Vian2g01824	97	PANTHER	10 KDA HEAT SHOCK PROTEIN	1	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	FunFam	10 kDa chaperonin, mitochondrial	1	97	-	-
	Vian2g01824	97	Pfam	Chaperonin 10 Kd subunit	5	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	SUPERFAMILY	GroES-like	3	96	IPR011032	-
	Vian2g01824	97	SMART	Cpn10_2	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	Hamap	Co-chaperonin GroES [groES].	4	96	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	PRINTS	10kDa chaperonin signature	82	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	PRINTS	10kDa chaperonin signature	26	47	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	PRINTS	10kDa chaperonin signature	5	20	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	PRINTS	10kDa chaperonin signature	61	73	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vian2g01824	97	CDD	cpn10	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g01824	Vian-Chr2	36757631	36759265	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g01824	3	96	Calmodulin-binding Proteins	AT5G20720	38.542	7.73e-12	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g01824	K04078		-	gmx:100306384	191.045