Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01818 ATGGATTCGGGAGACGACGAGACAGGTTCAGCCTCCTCATCGTCAGAAATATTCCTTCTCGGCTTCATCGAGGCCAACATCGTCGGTGTGCAGCACTATCACGCCACCATCAGCGGCCGCGCCGTCGTCGTCCTTCACCGTGAGCCCGACAACGTCCACGATGCCAACGCCATCAAAGCCAGCAACATCCACGGGGACCACGTCGGTTACATTGAACGCGCCGTCGCAGCCGTCCTCACCCCTCTCATCGACGACGAACTTATCACCGTCGAAGCCATCGTACCCGACGCCCGCAAAACCTACCGAATCCTCTGCCAAATCCACATCTTCGCTCGCCTCCAAGACTTTGACTTCGTCAAATGTGCCCTTTCCCGTTGCCCCTGCAGACTCATTAACGAATCCGAGGCCGCCTTCACCCTCTCTGACTCCGCCGCCGTTAAAGCCACCAAGGCGGTTAAGAAGACCATGACCGTCGACGCCATTTTCAGCCTCATGAACAGCTACCTTGCCAATAAGAACCGCGCCATCGATTTCTTGGAGCCTCCGAGGAGCATCATCAGAACCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCTGGTGGCTCGTTCGCAGAGAAAAAATTGATGACTTGCCACCCTTTTGGGAAGAAAACGATGGGAAGTTCGTAAATGTTTTAACCGATTATCAGACCGATAAAAGGCCTGACCCCTTGCGAGGTGGTATCTTCGCCGATGAGATGGGGTTGGGAAAGACCTTAACTCTGCTTTCTCTGATTGCTTTTGATAAATGGAGCCAAATGGGTTTCTCTAAGAAATGTAGAACGGATGGAAAGTGGGTTTCTTTAGAGAAGCGACGCAGGAATGAAATTGAGGGCTCCTGTGGAACCGAATTGAGAACAAATGCAACGTTGGTGGTGTGTTCTCCTTCTGCTATGTCGGCATGGATAACGCAATTAGAGGATCACACTGTACCTGGTGCATTGAAGACTTACATGTATTACGGGGAAAGAAGGACAGAGGACACTGAGGAGCTTAAGAAGTATGATTTGGTATTGACTACTTACACTACTTTGTCCAATGAATTGGACGAGATGCCGGCGAAGCAAATGGAGTGGCGGAGAATTATATTGGACGAAGCACACACCATCAAGAATTTCGCTGCTAACCTGAGTAAGACGGTTTTCAGGTTGAAAGGTCAGTACAGATGGGCTGTCACAGGGACACCAATTCAAAGTGGTTGCATTGATTTGTATTCTTTTATGGTCTTTTTGCGGTTTCAGCCGTTTTCGGAACGAAGACATTGGAGAATTTTGGTGCAAACCCCTCTTAATCTGGGCTTGGAAAACGGGTTCACACGGTTGCAGGTTTTGATGGGAGCAATTGCTTTGCGAAGAACAAAAGAGTTGGCATTGACGTTTCTGCCACCTAAAACCGTTGAGATTTGTTATGTTGGACTTTCTATGGAAGAACGGCAGCTGTATGAGAGGGAGAAAGAGAAAATAAAGGCATCGTTGAGAAGAGGTTATATCCGTGAGAGCAATCCACTTTCCGAGTCTAGCGAAGTGCTAAATAGTTTTCTATTACTCCGTCAAATCTGTGTTGATTTGAAATTGTGTAAATTTCAGTCAGGTAGCAGCAGCAGCAGCATCACAGATAGTGAAGGAGAAACAATTATATCTTATAATCCCGAGTTGCTGCAAAAATTACTTGGACAGCTGGAAGAAGGTGAAGATTTTGAATGTCCAATCTGTTTATCTCCTCCAATGGAAATTGTGATCACACGTTGTGCTCACATTTTCTGTCGTCCGTGTATACTGAGATCTCTAGAAGAGAGGAAAAAAAGTGGTTGTCCTCTTTGTCGGCAAAAACTCTCATCAGAATCTGATATATTCTCACCGCCTCCCCAGCCAGAGACAGACACTGCTGAACTGAGCTCAGCCTCAGAAAAACCGCTATCGTCCAAGGTTTCTGCTCTGATAAAATGTCTGGATGAATCAAGAGACCAAAATCCAGGTGTGAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGCTGTGTTTACTTGAAGAGCCTCTGAATGCAGCTGGTTTCAAGACTCTGCGTCTTGATGGGAAAATGAATGCTAAACAGAGAGCCAATGTTATTGTGCAGTTTCAAGCCCGAGAAAGTGGTTGTCCAACTGTTCTACTTGCAAGCCTGAGGGCTTCAAGTGCAGGTGTAAATCTGACAGCTGCCTCTAGACTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAACCAGCCCGTGAAGATTGTTCGATTCATTGCTCAAAACAGCTTTGAGGAGAAAATGTTGGTGTTGCAGGAAAGGAGGAAACTACTGTTGAAGGAACCATATGGGACGGAAAGAAAGGGCATTGGCTATCTAGATTTGAAATTCCTTCTAGATTCTTAG 2472 0.4697 MDSGDDETGSASSSSEIFLLGFIEANIVGVQHYHATISGRAVVVLHREPDNVHDANAIKASNIHGDHVGYIERAVAAVLTPLIDDELITVEAIVPDARKTYRILCQIHIFARLQDFDFVKCALSRCPCRLINESEAAFTLSDSAAVKATKAVKKTMTVDAIFSLMNSYLANKNRAIDFLEPPRSIIRTELLPHQKEGLWWLVRREKIDDLPPFWEENDGKFVNVLTDYQTDKRPDPLRGGIFADEMGLGKTLTLLSLIAFDKWSQMGFSKKCRTDGKWVSLEKRRRNEIEGSCGTELRTNATLVVCSPSAMSAWITQLEDHTVPGALKTYMYYGERRTEDTEELKKYDLVLTTYTTLSNELDEMPAKQMEWRRIILDEAHTIKNFAANLSKTVFRLKGQYRWAVTGTPIQSGCIDLYSFMVFLRFQPFSERRHWRILVQTPLNLGLENGFTRLQVLMGAIALRRTKELALTFLPPKTVEICYVGLSMEERQLYEREKEKIKASLRRGYIRESNPLSESSEVLNSFLLLRQICVDLKLCKFQSGSSSSSITDSEGETIISYNPELLQKLLGQLEEGEDFECPICLSPPMEIVITRCAHIFCRPCILRSLEERKKSGCPLCRQKLSSESDIFSPPPQPETDTAELSSASEKPLSSKVSALIKCLDESRDQNPGVKSVVFSQFRKLLCLLEEPLNAAGFKTLRLDGKMNAKQRANVIVQFQARESGCPTVLLASLRASSAGVNLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQNQPVKIVRFIAQNSFEEKMLVLQERRKLLLKEPYGTERKGIGYLDLKFLLDS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01818 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 654 820 IPR001650 -
Vian2g01818 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 426 IPR014001 -
Vian2g01818 823 SMART ring_2 580 619 IPR001841 -
Vian2g01818 823 SMART ultradead3 186 435 IPR014001 -
Vian2g01818 823 Gene3D - 225 465 IPR038718 -
Vian2g01818 823 Pfam HIRAN domain 20 107 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian2g01818 823 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 165 806 - -
Vian2g01818 823 Pfam Helicase conserved C-terminal domain 654 770 IPR001650 -
Vian2g01818 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 468 IPR027417 -
Vian2g01818 823 SMART helicmild6 685 770 IPR001650 -
Vian2g01818 823 Pfam SNF2-related domain 193 535 IPR000330 GO:0005524|GO:0140658
Vian2g01818 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 645 IPR013083 -
Vian2g01818 823 Pfam Zinc finger, C3HC4 type (RING finger) 580 619 IPR018957 GO:0046872
Vian2g01818 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 821 IPR027417 -
Vian2g01818 823 MobiDBLite consensus disorder prediction 627 649 - -
Vian2g01818 823 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian2g01818 823 ProSiteProfiles Zinc finger RING-type profile. 580 620 IPR001841 -
Vian2g01818 823 Gene3D - 474 811 IPR027417 -
Vian2g01818 823 SUPERFAMILY RING/U-box 563 629 - -
Vian2g01818 823 Gene3D - 11 130 - -
Vian2g01818 823 CDD SF2_C_SNF 648 781 - -
Vian2g01818 823 ProSitePatterns Zinc finger RING-type signature. 595 604 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01818 Vian-Chr2 36701417 36704367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01818 15 810 RAD5 or RAD16-like Gene Family AT5G05130 52.375 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian2g01818 SNF2_N 6.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01818 K15711 - gmx:100791783 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01818 2 36701417 36704367 Vian2g01818 2 36701417 36704367 ECH