Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01817 ATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCGAATTCGGATATTTTTGAGATAATTGAAAACGCCATAATCGTGGCGGCTACGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATGCGATTGCAGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGCGGGTTGTGACCGTGTGGAGTTGGCTGCGAGGGGAGTTGGTAAAGAGAGTGATGAAGAAGGCTGCAAGAATGGGGTAGAAAGAAATGCGGGTGAGTTCGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAGATGAGGATGCAGAGATTGATGTGAATGGTGTTAGCAACTACAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACGCAGTATATGGGGGAGATTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAAGAGTCTGAGTCTGTCTTATTTGAATCGTTGAGGAGGCTTCAGCTGATAGAGCTAACAGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAACGAGGATCAAAGGAAATTCGTCAACTTGCAAAAACTCTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACCACAGCTATTGCAGCTTCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCGCCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATGGAACTTTCTCAGTTTTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGTCCATCCCACAAGAACCGTGTCAATAATGGCAGAAAGCCAGCAGCCATCCCTAATAGGGAGGATAAGAGTCAACAAGCAAAGAGAAATGTGGCTGATGTGCCAGTGAGGCCAAATAAGCCAGTAAGCTCTGATTCTGGCCCTGGCAGACCCCTCCCATCTAATAATATGCAGAGAAAAAGTAATGTGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCCCAAGGAGGCATCCCATTGGTCATCTAGATAAACCCATGCATTCAGATGATGCGGCTGTCCAAGCAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAGTTATCAACAAGCTGAAAAAGCCAAGAGACAGAGAACAATCCAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCAAATGCGAAGCCTGGTTTTCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1317 0.4579 MKSWSVDEWREYFVSSNSDIFEIIENAIIVAATDCPKEFRVKRDAIAERLFCSRLTRCAGCDRVELAARGVGKESDEEGCKNGVERNAGEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYMGEILRIKDVLLNREEESESVLFESLRRLQLIELTVDCLKATEIGKAVNPLRKRGSKEIRQLAKTLIDGWKQMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSMELSQFFDGMDDDGNPRPSGPSHKNRVNNGRKPAAIPNREDKSQQAKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSIPRRHPIGHLDKPMHSDDAAVQAKLEATKRRLQESYQQAEKAKRQRTIQVMEINDLPKHVNYRNPNAKPGFHNRNRANTRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01817 438 SMART TFS2_5 137 212 IPR003617 GO:0005634
Vian2g01817 438 MobiDBLite consensus disorder prediction 330 357 - -
Vian2g01817 438 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
Vian2g01817 438 CDD TFIIS_I 139 211 - -
Vian2g01817 438 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Vian2g01817 438 MobiDBLite consensus disorder prediction 359 375 - -
Vian2g01817 438 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Vian2g01817 438 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 423 IPR044805 -
Vian2g01817 438 MobiDBLite consensus disorder prediction 222 375 - -
Vian2g01817 438 MobiDBLite consensus disorder prediction 413 438 - -
Vian2g01817 438 Coils Coil 379 402 - -
Vian2g01817 438 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01817 Vian-Chr2 36624217 36626856 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vian2g01817 Med26 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01817 - - gmx:100799367 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01817 2 36624217 36626856 Vian2g01817 2 36624217 36626856 ECH