Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01812 ATGCCTTCGAGCTCGAATTCAAAGCAGAAAAGGAAGCAATTGAAGGCGCAGCTGCAAAACTCACCATTGTCGTCGAATGCCACCACCGTGCCTCCCAAAACGCAGCAACAACAAGCACAAGAGCATGCCTCTTTATGCGAAGAAGCTTCTAGAAAGTTCCCTTCTCTCATCGCTGAATCCGCGATCGTCGCTAAAATCATACATGTCGACGACACCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTCTCCGAACCTTCGATGCTCTCCTCCTCTCTCTCCCCGGGTTCGATTGTGTCGGTGTCTATTCCATCTTCAGACGAGAAAAGTTCACAATTGCATAGTTTTCCCCTCGTGTCATTAGCTAATGAGTGTGCCAAATGCCATGGACTGGAAATCGGGACGGCAGTTGATGATGATGATGCGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCCAATAAGGTTTTGAAGGATGGAGTACGCCTGTCTTCAAACCTTTATTATTCTATGGGATGTCCTCCTATGGGTTCAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGGGAGCAATCAAAAGCATTATATGGAAAATAATTGTTTACCTATTAATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAGTGGGCTACCATTGAAGTTTAATAATTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACATTGTTGCTTCTCCTGCAACACCTTCTTCTGTATCAAAGTTTTCTAATGTTAGTGGTTTGTCTTCTCCACAATTTGAGGATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCACTGATTTCATCTGATGTCAGCTTAGCATTAAGTGATGAAAGTTCTAAGCAGTCACTTGAGACATGGGCAACTTCATGGTTATATTCTCGATCTTTACTTCTAGGGAATCTTGTCAGTATTCCAATGTTTTCAGAGTGTTTTTTCCAAGTGATAGGAGCTAAGAAGAAGCCAGTTGCCAAATCTGGTCATTTTCCATCAGATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGTATATCAGGCTTTCACTGTTAATTACGAAACAAAGGTATTTTTATCTTTGCCGTCAAATGCAGCATCAGCATCTGAACAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCTAATGTTAGCTTACCGGATAAAATCTCTAAATTAGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCGTCAGTGAACGATGCTTTATCAAGCTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACCGGTACAGGAAAGACTTCCCTGGCTCAATTATGTACTCATGATGTTGGAGTCAAATTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCTTTGCATAAAGTTTTTGATTCCGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCCATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGTTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATTGCTGCCACTAACCGCCCTGACCATATTGATCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGATCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGAGTTACAAATTGAACAGCTTGGTACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGTTGCACTTTGCAATGAGGCAGCCTTGATTTGTCTACGGCATTATGCTAGCTTTAAGAAGACTTATGATTCTTGTTCTGATTATATAACCGGGAAACCTGTTCTGAGGAATGGTGCAACAAACTCAATAGATCATTTGGATGAGTCAACTTCATCTACTTCAGATATGTTGGCCGCCAGTTGTGTATTACCTTCTTGCATGGTAACTTGTGAAACTACGGATATAATTCCTGATAGTGGTAAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAAGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTCGACCGTATTGGAACTCGCCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCATTATTTGCAAAAGCAAGGGTCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTAGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGCGGATAGGGAAGAGATATTTCGCATTCATCTACGTAAAATCCCATGCGGTTCTGATGTTAGCCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGTGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGACGGCAATAAAACAGATCCAGCCATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACTGCAGTGATATAAAGGATGAATTCAATCCTATGCAGCGCGACATTAAATCTACTCACTTCAACATTTGGAAGTTCATAAAATCTTGCACGTTGTTCCTCTATCAGACTCCAGCTTCCATCTTCAATTTAAGAACTGCTCGAAGTAGTTAA 3183 0.4178 MPSSSNSKQKRKQLKAQLQNSPLSSNATTVPPKTQQQQAQEHASLCEEASRKFPSLIAESAIVAKIIHVDDTVPLFKGFRIWLSEPSMLSSSLSPGSIVSVSIPSSDEKSSQLHSFPLVSLANECAKCHGLEIGTAVDDDDAGNYFVLATVFPANKVLKDGVRLSSNLYYSMGCPPMGSSVFVCALQKQLLPTPASGSNQKHYMENNCLPINNCKELYLQLVPSKSGLPLKFNNFPSLDVSKVKSHVQFENDIVASPATPSSVSKFSNVSGLSSPQFEDSASSVPNQKSQSLISSDVSLALSDESSKQSLETWATSWLYSRSLLLGNLVSIPMFSECFFQVIGAKKKPVAKSGHFPSDGSSDLYPEDSDIADSVYQAFTVNYETKVFLSLPSNAASASEQPIQRDIPCVKLEHKVANVSLPDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVKFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIDPALRRPGRFDKEIEIGVPSPKQRSDILITLLNEMDHCLSELQIEQLGTVTHGFVGADLVALCNEAALICLRHYASFKKTYDSCSDYITGKPVLRNGATNSIDHLDESTSSTSDMLAASCVLPSCMVTCETTDIIPDSGKEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARVNAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEADREEIFRIHLRKIPCGSDVSLRELALLTDGCTGADISLICREAAVAAIEESLDASVITMKHLKTAIKQIQPSDVHSYQKLSTKFQRAVHCSDIKDEFNPMQRDIKSTHFNIWKFIKSCTLFLYQTPASIFNLRTARSS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01812 1060 Gene3D - 919 989 - -
Vian2g01812 1060 Gene3D - 410 590 IPR027417 -
Vian2g01812 1060 SMART AAA_5 456 592 IPR003593 GO:0016887
Vian2g01812 1060 SMART AAA_5 782 920 IPR003593 GO:0016887
Vian2g01812 1060 Pfam ATPase family associated with various cellular activities (AAA) 786 917 IPR003959 GO:0005524|GO:0016887
Vian2g01812 1060 Pfam ATPase family associated with various cellular activities (AAA) 460 589 IPR003959 GO:0005524|GO:0016887
Vian2g01812 1060 FunFam calmodulin-interacting protein 111 isoform X1 743 918 - -
Vian2g01812 1060 PANTHER AAA-FAMILY ATPASE 69 1007 - -
Vian2g01812 1060 ProSitePatterns AAA-protein family signature. 560 578 IPR003960 GO:0005524|GO:0016887
Vian2g01812 1060 FunFam Putative vesicular transport protein (CDC48) 411 589 - -
Vian2g01812 1060 MobiDBLite consensus disorder prediction 1 44 - -
Vian2g01812 1060 FunFam spermatogenesis-associated protein 5-like protein 1 919 1001 - -
Vian2g01812 1060 Gene3D - 591 746 - -
Vian2g01812 1060 ProSitePatterns AAA-protein family signature. 888 906 IPR003960 GO:0005524|GO:0016887
Vian2g01812 1060 Gene3D - 747 994 IPR027417 -
Vian2g01812 1060 FunFam Calmodulin-interacting protein 111 591 746 - -
Vian2g01812 1060 MobiDBLite consensus disorder prediction 1 45 - -
Vian2g01812 1060 Pfam AAA+ lid domain 940 985 IPR041569 -
Vian2g01812 1060 Pfam AAA+ lid domain 615 645 IPR041569 -
Vian2g01812 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 997 IPR027417 -
Vian2g01812 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 649 IPR027417 -
Vian2g01812 1060 CDD RecA-like_CDC48_r2-like 757 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01812 Vian-Chr2 36499980 36508059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01812 7 1050 Calmodulin-binding Proteins AT3G56690 54.059 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01812 - - vum:124834498 2028.45