Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01796 ATGCCAATGGCAGTTTCTCATCTGAGCCACTCTCATCAAAATCAACTGAAAACTGAAGACTCACAATTCTTTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAGCGGATTCTCAGAAAAGGAGTCTCTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTTCACGTTTCGTTTCAAATTAGGCCAGTGTGAAGTTATCAAAGGATGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAACAAGGTTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGAAATTGAAATGCTGTCTTGGAGCACCATAAGGGATTTGACTGGCGATGGAGGAATCATGAAAAAGCTAATAAGAGAGGGAGAAGGATGGGCCACTCCCAGAGAAGATGACGAGGTGCTAGTGAAATATGAAGCACGGCTGGAGAATGGGATGCTTGTCTCAAAGTCTGAGGAGGGAGTGGAGTTTAATGTAAGTTATGGCTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGAACTAGCAGTGAGATTATTTTACGGGCAGAGTAAAAATTCAAATATGACCACTCAGCTAGATGGTGTTTCTCCACCAGATTCTAATTTAACTAGCATCAAGCTTGAACTGGTATCATGGAAAGTTGTTACAGATGTCACAGGAGACAAGAAGATACTGAAAAAGATTAAGAAAGTGGGTGAGGGGTTTGATCGTCCTAACGAGGGATCACAAGTGAAAGTGATATATTTGTGCAAAGGGGAAGATGATATAATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTTACAACTCAAGAAGAACAAGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTAATCGTCCATGCAGAATATTTGTGCGGCTCTAATAATTCACAGGGAAACACAGCAAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTTGTCAAGGAAAAACCATTTTGGAAAATGAACACAGAAGAGAAAATAGAAGCCTGTGAGAGAAAGAAGCATGAAGGAAATCTGCTGTTCAAAGCTGAAAATTTCATGCACGCATCTAAGAAATATGAAAAGGCTGTAAAGTACATTGAGTTTGATCACTCATTCGGTGAAGATGAGAAGCATCGTTCTAATAACTTACGTTTATCCTGCAACTTGAACAATGCTGCCTGCAAACTTAAATTGGGAGAGTATATTGAAGCTTCAAGACTATGCACAAAGGTCCTACAAGAAGACCCTTCAAATATCAAGGCTCTTTATAGAAGATGCCAAGCATACATGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGACCATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTCAAAGTTAAGCAAAAGGAATACAATGCATATGAAGCTGGCATCTTCAGCACAATGGTTTCAAGAATGAGCTAG 1620 0.3975 MPMAVSHLSHSHQNQLKTEDSQFFFKEIGNEGLTKRILRKGVSWQTPFSGDEVEVHFRGHVENGASLESSYDKGFTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEQGSPPLVPPNATLIYEIEMLSWSTIRDLTGDGGIMKKLIREGEGWATPREDDEVLVKYEARLENGMLVSKSEEGVEFNVSYGYLCPAMSIAVKTMRKGEVAELAVRLFYGQSKNSNMTTQLDGVSPPDSNLTSIKLELVSWKVVTDVTGDKKILKKIKKVGEGFDRPNEGSQVKVIYLCKGEDDIIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVIVHAEYLCGSNNSQGNTANNKVLYYEVELVDFVKEKPFWKMNTEEKIEACERKKHEGNLLFKAENFMHASKKYEKAVKYIEFDHSFGEDEKHRSNNLRLSCNLNNAACKLKLGEYIEASRLCTKVLQEDPSNIKALYRRCQAYMKTSDLEKAEADIKRALTIDPNNRDIKLEYKELKVKQKEYNAYEAGIFSTMVSRMS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01796 539 PANTHER PEPTIDYLPROLYL ISOMERASE 27 141 - -
Vian2g01796 539 Gene3D - 140 257 IPR046357 GO:0003755
Vian2g01796 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Vian2g01796 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Vian2g01796 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Vian2g01796 539 FunFam Peptidylprolyl isomerase 378 533 - -
Vian2g01796 539 Gene3D Tetratricopeptide repeat domain 376 532 IPR011990 GO:0005515
Vian2g01796 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Vian2g01796 539 Gene3D - 258 375 IPR046357 GO:0003755
Vian2g01796 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Vian2g01796 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Vian2g01796 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Vian2g01796 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Vian2g01796 539 Pfam Tetratricopeptide repeat 474 506 IPR001440 GO:0005515
Vian2g01796 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Vian2g01796 539 SUPERFAMILY FKBP-like 143 226 - -
Vian2g01796 539 SUPERFAMILY FKBP-like 19 136 - -
Vian2g01796 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Vian2g01796 539 FunFam Peptidyl-prolyl cis-trans isomerase 26 138 - -
Vian2g01796 539 SUPERFAMILY TPR-like 379 527 IPR011990 GO:0005515
Vian2g01796 539 Gene3D - 5 139 IPR046357 GO:0003755
Vian2g01796 539 SUPERFAMILY FKBP-like 255 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01796 Vian-Chr2 36289339 36292979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01796 27 538 Calmodulin-binding Proteins AT5G48570 53.950 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01796 - - pvu:PHAVU_001G118200g 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01796 2 36289339 36292979 Vian2g01796 2 36289339 36292979 ECH