Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01772 ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCCGCTGAACCTCCGCTCAAGCAACACCAACCTGAACCCCAAATTGCGCCACCCGAGTATGAGGAAGTCGAAGAGGAAGAAGAGGAGGAAGAAGAAGTAGAGGAAGTAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACGATGAAGAGCAAGAACAGCAGCAAGATGAGGATGACGACCCGATCGAAAAGCTTCTGGAACCTTTAAGCAAGGACCAGATCTTAAACCTTCTATGCGAGGCGGCGGCAAATCACCGCGACGTGGCGGACCGGATCCGCAAGGCGGCTGACGAGGATCCCGTGCACAGGAAGATCTTTGTCCACGGGTTGGGGTGGGACACCACCGCGGGAACCCTAATCAGTGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACGGACAAGGTTTCTGGTAAGTCCAAAGGTTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGTGCAACGCGCTAAAGCAGCCGCAGAAGAAGATCGGCAATCGCATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTAGCAACCAGAGCCAGCCGCAGGCAATGCCTTCCTCAGCGCCGACGCTGTCATCGTCGGCTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGGCTGGATAAGCTAACAGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAGTCCGGAGAGTGCGAAGAGAGCCTTGGAAGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAGCAGCAGCAACACGGGAACGTGAATGCTCAGGTCCAGCGGACTCAGTTTCAGAGGAATGATACTGCCAATGCAGGTGGCGCGTATGTTGGTAGTGCTGCAGCAGCGCAGCCGGGACACTTGATGGCCCCCGCTGGGCCAGGGATTGGGTTTAACCAAGCGGCGTTGAATCCGGCTTTGGGGCAGGCGTTGACGGCCCTCCTGGCATCGCAAGGGACGTTGGGGCTGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCAGGGGCTGGAGTACAGAGTGGCTACAGTGCTCAGTCAAATATTAGTCCGGGTGTTATTGGTGGATATGGGACCCAGGTGGGGTTGCAGGCTGCATATCCGAATACGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGGTGGTGCGCCTTACATGGGGCATTAG 1395 0.5627 MGKKRKVAPKSSQSAEPPLKQHQPEPQIAPPEYEEVEEEEEEEEEVEEVEEEEEEEEEEEEEDDEEQEQQQDEDDDPIEKLLEPLSKDQILNLLCEAAANHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGACNALKQPQKKIGNRMTACQLASIGPVSSNQSQPQAMPSSAPTLSSSASEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSPESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVNAQVQRTQFQRNDTANAGGAYVGSAAAAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLNLLGSIGTSAAVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQAAYPNTNQQIGQGGSGRGQYGGGGAPYMGH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01772 464 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vian2g01772 464 SMART rrm1_1 227 299 IPR000504 GO:0003723
Vian2g01772 464 SUPERFAMILY RNA-binding domain, RBD 206 321 IPR035979 GO:0003676
Vian2g01772 464 MobiDBLite consensus disorder prediction 199 219 - -
Vian2g01772 464 Gene3D - 202 320 IPR012677 -
Vian2g01772 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 312 - -
Vian2g01772 464 SUPERFAMILY RNA-binding domain, RBD 118 199 IPR035979 GO:0003676
Vian2g01772 464 FunFam UBP1-associated protein 2A 112 196 - -
Vian2g01772 464 MobiDBLite consensus disorder prediction 31 75 - -
Vian2g01772 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 315 IPR000504 GO:0003723
Vian2g01772 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Vian2g01772 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 295 IPR000504 GO:0003723
Vian2g01772 464 Coils Coil 32 75 - -
Vian2g01772 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Vian2g01772 464 MobiDBLite consensus disorder prediction 1 75 - -
Vian2g01772 464 MobiDBLite consensus disorder prediction 442 464 - -
Vian2g01772 464 FunFam UBP1-associated protein 2A 212 342 - -
Vian2g01772 464 Gene3D - 30 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01772 Vian-Chr2 35879308 35880702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01772 213 401 C2H2 Transcription Factor Family AT2G19380 25.628 1.63e-10 61.2