Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01719 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTTGAGCAGCATAAAAAAGGAGGAGGAACTGGGAAGACCCAGTGAATGTGGAGAAAACTCTGAAAAACAAGAAAAATCTTCTGATTCAAGAGATAGTAAACAAGAGTTAGAGCATAAAGTGCAGGAAAATGAGCCAATAGTAAATCCCAAACCCGCGGAAGATAACACGGAGAATGGTGGCTCAGACCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCGGTGTCCACGATGTAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAACGTTAACCAACCTAGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAACAAACACCTAGCTTCTCAATACCGACACATTATAGTATCCTCTAATGGAATTCCTGCATCCAGACTAGAAACTGAGGACGCATCTGGTTTCCAACATGTCACAAATCTTGAATCCTCGGTTCCTTTCAGGTCTTCAGCAGATAGCAGCACTGTTTTGAAATTTGGGCCAGATACCACTCTTTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACGATAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGCAGAGTATGCTGGGGAACCATCTTTGTGTGGGTCTTCTGTGACGAACAACAGTACTCAGGGAAATGAATTATCAGAACACAAGACATCAAATTGGTTACAATGCTACCCTGTTCCTCCATGGGTGTTAACTTATCCGGGTTGGAATAATGTGAGTTCCGTGGAAGCAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCATACAACACTGGTCCTGCAGCAATGCAATGGTGTCCCACAGCAATGGTGGCAATTCCTGGCATGTGTCCACCCAGCATTCCTTTTCAGGTTGTTCCACCATCATGCTGGAGTGGAACAACGCATTGGAATGCTGGAACTGGGACAGTGTCCATAGGATCCAATGCTTGCCTTTCGCCATCGTCCTCCACCAGTAACAGTTGTTGCTCAGGCAATGGCTCCCCAACCCTTGGAAAACATGCAAGAGATACTGTTTTTGCTGATGAAGAGAAATCAGATAAGTGTGTTTTGGTTCCAAAGACCATCAGAACCGATGCCTCTAACGAGGCCTCAAAATGTCCTATAAGGGCTGCATTAAGCATCAAGCCTGATCAACAGAAGAAAATTGAACCAAAAGAAGGCAAAGATCGTGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATATAG 1416 0.4456 MSQTEKDPGIRLFGRKIPVPECQIPANSGPTDALSSIKKEEELGRPSECGENSEKQEKSSDSRDSKQELEHKVQENEPIVNPKPAEDNTENGGSDQDKVLKKPDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVSSNGIPASRLETEDASGFQHVTNLESSVPFRSSADSSTVLKFGPDTTLCESMDSMLNLRDDRRCVDASSINRAEYAGEPSLCGSSVTNNSTQGNELSEHKTSNWLQCYPVPPWVLTYPGWNNVSSVEAVHQSSAPMCSPYNTGPAAMQWCPTAMVAIPGMCPPSIPFQVVPPSCWSGTTHWNAGTGTVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHARDTVFADEEKSDKCVLVPKTIRTDASNEASKCPIRAALSIKPDQQKKIEPKEGKDRVLGASQILEANPAAISRAHAFQESI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01719 471 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Vian2g01719 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Vian2g01719 471 MobiDBLite consensus disorder prediction 35 77 - -
Vian2g01719 471 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Vian2g01719 471 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Vian2g01719 471 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01719 Vian-Chr2 35162141 35164488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01719 7 470 C2C2-Dof Transcription Factor Family AT5G39660 35.728 2.58e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g01719 zf-Dof 8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01719 - - gmx:100813787 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01719 2 35162141 35164488 Vian2g01719 2 35162141 35164488 ECH