Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01702 ATGGTAAAGGGTTCACATGAGTTCAAGGTGAAAGGTTATTCACTGGTGAAGGGAATCGGAGTGGGAAAATTTATTGCAAGTGAGACGTTCAATGTTGGAGGGTATGAGTGGGCTATATACTTCTACCCTGACGGTGTAGACACCCGAGAACACGCCACAGTTTATGTCTCGGTTTTCGTTGTGCTCGTTTCCAATGCTAATGATGTTCGAGCGATGTTTGAATTCGCCATGCATGACCAAAGAGGGCAAGGGGAACACTTTGTCCTTGGTCACTTTAATGACACTCTAGGGACTGAGCCTCACACTTTATCCAAGGGGGAAATGTGGGGGATTAAACGTTTTTACAAACGCTTTCACCTTGAACACTCAATGTATCTCATAGATGACTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCTACCACCCGAGATAATTCCATGACTATAGAAGTTCCCGAATCTACCATTTCAACAAGTTTTGGGATGCTGTTTGAAGATGAGCAATCATCTGATGTTACGTTTTGTGTCGGAGGAAACAAGTTTTATGCGCATAAGATTGTATTGGCGACTCGGTCAAGTGTGTTTAAATCTCAGTTTTTCTGTGGAACTGACAAGGTTGATAGAGAGATACTTGTCAATGAGATGGAGCCTAAGGTTTTCAAGGCATTACTGCACTTTATTTATAAAGATACTCTTATAGAAGATGAAGAACTCCATTTGTCAATGTCTTCATCCTTGGCTTCTATCTCAGAATGGTATGTATCGAAGTTGCTGGCTGCTGCACACAAGTACGATTTACCAAGGCTAAAGTTGATGTGTGAATCTGTACTTTGCAAACATATATCTATAGATTCTGTTGCTCAAATTCTGGTTATTTCTGATTGTTATGATGCCACTGAATTGAAGTTCATATGTCTGCAATTTTCAGCAGAAAACCTTAATGCTGTGCTGAAATCTGATGGTTTCAAGCATCTTAAGGAAAAGTGTCCACTTCTTCCATTTGAACTGCTAGAGACTGTGGCAGCAGGAATTGGGTGTGTCAGTGTTGACAGTGATGCAACCACACCTGAGCCAAATGAAATAGAAGCTGAGAGCACAAGTTATTATCCTTCCAGCGATGAGGAAAACCATCTGGGTTGGTAG 1146 0.4136 MVKGSHEFKVKGYSLVKGIGVGKFIASETFNVGGYEWAIYFYPDGVDTREHATVYVSVFVVLVSNANDVRAMFEFAMHDQRGQGEHFVLGHFNDTLGTEPHTLSKGEMWGIKRFYKRFHLEHSMYLIDDCLQVNCTVGVLPTTRDNSMTIEVPESTISTSFGMLFEDEQSSDVTFCVGGNKFYAHKIVLATRSSVFKSQFFCGTDKVDREILVNEMEPKVFKALLHFIYKDTLIEDEELHLSMSSSLASISEWYVSKLLAAAHKYDLPRLKLMCESVLCKHISIDSVAQILVISDCYDATELKFICLQFSAENLNAVLKSDGFKHLKEKCPLLPFELLETVAAGIGCVSVDSDATTPEPNEIEAESTSYYPSSDEENHLGW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01702 381 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 336 IPR045005 GO:0016567
Vian2g01702 381 MobiDBLite consensus disorder prediction 352 381 - -
Vian2g01702 381 ProSiteProfiles MATH/TRAF domain profile. 3 137 IPR002083 GO:0005515
Vian2g01702 381 SMART BTB_4 171 282 IPR000210 GO:0005515
Vian2g01702 381 ProSiteProfiles BTB domain profile. 171 237 IPR000210 GO:0005515
Vian2g01702 381 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 140 IPR008974 GO:0005515
Vian2g01702 381 CDD BTB_POZ_BPM_plant 161 279 - -
Vian2g01702 381 Pfam BTB/POZ domain 163 281 IPR000210 GO:0005515
Vian2g01702 381 SUPERFAMILY POZ domain 147 282 IPR011333 -
Vian2g01702 381 SUPERFAMILY TRAF domain-like 2 144 - -
Vian2g01702 381 MobiDBLite consensus disorder prediction 353 374 - -
Vian2g01702 381 Gene3D - 283 349 - -
Vian2g01702 381 Gene3D Potassium Channel Kv1.1; Chain A 147 282 IPR011333 -
Vian2g01702 381 CDD MATH 4 137 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01702 Vian-Chr2 34845213 34846653 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vian2g01702 BTB 1.1e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01702 K10523 - gmx:100809683 413.69