Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01701 ATGATGACGGGAGGGCGTAGGAGAAGTGTGAATTCTTGGAGCAGTTCTGAATCGGTGACAGAGACAGTGTTAGGGTCTCACATGTTTGAAATAAAAGGGTACTCTTTGACAAAGGGAATGGGCATTGGAAAATGCATTGGGAGCAAGAAGTTCAGCGTTGGAGGGTACGAGTGGGGCATACAGTTCTACCCAGATGGCAAATACTCCAAAGATAACTCCTCTTACGTTTCTCTCTTCATCACACTCTATTCCAACGCCACCGATGTTCCCACCTTTTATCATATCAACATGCTCGATCAGACACCAAAACGAAAACGCCATGCTGGTACTCACTACGATCACTCCTTCGAATGTGGACCCTGCGTTTTCAAAACCCGTGGCAGCATGTGGGGTTATAACCGGTTCTGCAATCGGAAAGATCTTGAGGCTTCAGGTTTTCTCAAGGATGACTGCTTGAAGATTGAGTGCACTATTGGTGTTGTGGTGACATCGTGCAGTGATTCTTCCAAGTTAAACAAAATACACGTTCCTGAGTCTGATATGAGGGAACAGTTCGGGATGCTGTTAGATTCTGGGGCATTTTCTGATATTACTTTCTCAGTTAGAGGACAAAAGTTTCATGCTCATAAGCTTGTATTGGCTACTCGCTCAAAACTGTTTCTAACTGAGTTTGTTAATGGGAGGGAGAAGGATGAAGATGGTCACATACTTGTTAATGACATTGAACCTAGGGTTTTCAAGCTAGGTTACTTTCAATGTGTCATGCAGCCAGGACTTAAGGCTTTGCTTCATTTTATTTATAGAGACTCTCTAATACACGATAGAGAGCTTTATAAGTCACGTTCATCACTGTATTCTTCGGTATCTGAAACATTTCCTGCAAAGTTATTAGCAGCTGCAGAAAAGTTTGATTTATCAAGACTTAAGCTGATGTGTGAATCTGTACTGTGCAATGATATATCTACAGATTCTGTTGTCAACATTTTACTTCTTGCTGATCGTAATCATGCAACTGAATTGAAGTTCGCCTGTCTAAAATTTGCTGTTCAAAACCTTAATGCTGTCATGCAATCTGACTGTTTCAAATATCTTACTCAAAAGAATCCACTGTTGCAAGTTGAACTGCTCAAAACTTGGGTAGAATGCAAGGAACCATTTATTGGAAAACCAAAATATGAATCTTTGAAGACCCAGTCTCCAGATGAAGATCATTAA 1215 0.4091 MMTGGRRRSVNSWSSSESVTETVLGSHMFEIKGYSLTKGMGIGKCIGSKKFSVGGYEWGIQFYPDGKYSKDNSSYVSLFITLYSNATDVPTFYHINMLDQTPKRKRHAGTHYDHSFECGPCVFKTRGSMWGYNRFCNRKDLEASGFLKDDCLKIECTIGVVVTSCSDSSKLNKIHVPESDMREQFGMLLDSGAFSDITFSVRGQKFHAHKLVLATRSKLFLTEFVNGREKDEDGHILVNDIEPRVFKLGYFQCVMQPGLKALLHFIYRDSLIHDRELYKSRSSLYSSVSETFPAKLLAAAEKFDLSRLKLMCESVLCNDISTDSVVNILLLADRNHATELKFACLKFAVQNLNAVMQSDCFKYLTQKNPLLQVELLKTWVECKEPFIGKPKYESLKTQSPDEDH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01701 404 CDD MATH 25 158 IPR002083 GO:0005515
Vian2g01701 404 ProSiteProfiles MATH/TRAF domain profile. 24 158 IPR002083 GO:0005515
Vian2g01701 404 SUPERFAMILY TRAF domain-like 21 160 - -
Vian2g01701 404 ProSiteProfiles BTB domain profile. 195 275 IPR000210 GO:0005515
Vian2g01701 404 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 374 IPR045005 GO:0016567
Vian2g01701 404 Pfam BTB/POZ domain 187 247 IPR000210 GO:0005515
Vian2g01701 404 Gene3D - 319 397 - -
Vian2g01701 404 SUPERFAMILY POZ domain 174 318 IPR011333 -
Vian2g01701 404 Gene3D Potassium Channel Kv1.1; Chain A 171 314 IPR011333 -
Vian2g01701 404 SMART BTB_4 195 320 IPR000210 GO:0005515
Vian2g01701 404 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 24 162 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01701 Vian-Chr2 34829674 34832175 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vian2g01701 BTB 5.9e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01701 K10523 - gmx:100818306 427.943