Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01686 ATGGACAGGCTAATAAAAGTAGACCCGACGAACACTGTTTCGATAAGGATGGAGCCAGGCCAAAAATGCCATGGCAAAATCACCTTACGCAATGTTATGTACACGATGCCTGTGGCCTTCAGAATTCAACCGTTGATCAAAACGCGTTACACTGTCAAGCCTCAATCTGGGATCATATCCCCGTTAGCCTCGGTAACCGTAGAAATCCTCTACCATCTCCCACAAGGCTCCACTCTCCCTCACTCCGAAGACTCCTTCCTCCTCCACAGCGTCGTGGTTCCCGGCGCCACCATCAAAGAACCCTCCTCCATGTTCGAGTCCGTTCCCTCCGATTGGTTCACGGCCAAGAAGAAACAAGTCTTCATCGACAGCGGCATCAAGATCATCTTCGTCGGCTCGCTCATTCTCGCTCAGCTAGTCCACGACGGCTCCATTGACGAAATCAGAGAAGCTCTCGAACACAGTGAAGCTTCATGGAAAGCCGTTGACTCCGTTGACTCAAACGGCGACACGCTCCTCCACGTGGCGATTTCCAAGAGCAGACCCGACCTAGTTCAATTACTCCTCGAGTTCAACGCAGACATCGAAGCAAAAGATCGTTCTGGCATGACCCCTCTGGAAAAAGCCTGCTCTTTGGGCGAAGAACTGACCGTTGAGCTTCTGTTAGCTCACAAGGCCACCACAGAGAGAACGGAAACCTCGTCTTTGGGTGCGATTCATTTGGCGGCGCGAGAAGGGCACGTGGAGGTTCTGCGGCTGCTGTTACTCAAAGGCGCGAATGTTGACTCGTTGACCAAAGACGGCGAAACCGCGCTGCACCTTGCAGTGAAGCATGGCGAGAGAGATTTCGTGAGGATGTTGCTGGCGAACGACGCGCGAACCGACGTTCGCGACTCGCGAGAGGGTGATACGTGTCTGCACGTGGCGGCGGGTGTGGGCGACGAGGAGATGGTGAAGCTGTTGCTGAAGAAAGGGGCGAACAAGGACGTGAGGAACTTCGCGAGTAGGACAGCGTACGACGTGGCGGCGGAGAACGGGCATGCGGGCGTGTTTGACGCGCTGGGGCTCGGGGACGGGCTGTGCTCGGCGGCGAGGAGGGGGGAGGTGAGGAGCATCAAGCGGCTGATCGAGGGCGGCGCGGTGGTGAACGGAAGGGACCAGCACGGGTGGACGGCGCTCCACAGGGCTTGTTTCAAGGGGAGGGTGGAGGCTGTTAGGGTTTTGTTGGAGAGAGGCAGCGACGTGGACGCGAGGGATGAGGAGGGGTACAGTGCGCTGCACTGCGCAGTGGAGTCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAAGGGGGCGGATGTTGAGGCGAGGACTAACAAGGGCGTGACGGCGCTGCAGATCGCGGAGGCGTTGGGTTACGTTGGGATTACGAGGGTGCTGGTTAGCGGCGGTGCGGAGAGCTTGGGACACGTGGCACATGGAGAAGAACTTGTGGAGGTGAAGACGAAGAAGAAGAAAATGGGAAGAAGGAGGGAGCGATCGATTCGGGGGAGCTTTGATCGGTCAATGCCTTTGGCTGTGCTCTAG 1569 0.5736 MDRLIKVDPTNTVSIRMEPGQKCHGKITLRNVMYTMPVAFRIQPLIKTRYTVKPQSGIISPLASVTVEILYHLPQGSTLPHSEDSFLLHSVVVPGATIKEPSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAQLVHDGSIDEIREALEHSEASWKAVDSVDSNGDTLLHVAISKSRPDLVQLLLEFNADIEAKDRSGMTPLEKACSLGEELTVELLLAHKATTERTETSSLGAIHLAAREGHVEVLRLLLLKGANVDSLTKDGETALHLAVKHGERDFVRMLLANDARTDVRDSREGDTCLHVAAGVGDEEMVKLLLKKGANKDVRNFASRTAYDVAAENGHAGVFDALGLGDGLCSAARRGEVRSIKRLIEGGAVVNGRDQHGWTALHRACFKGRVEAVRVLLERGSDVDARDEEGYSALHCAVESGHADVAEVLVKKGADVEARTNKGVTALQIAEALGYVGITRVLVSGGAESLGHVAHGEELVEVKTKKKKMGRRRERSIRGSFDRSMPLAVL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 234 262 - -
Vian2g01686 522 Gene3D - 356 494 IPR036770 -
Vian2g01686 522 SMART ANK_2a 267 298 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 388 417 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 168 197 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 454 484 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 234 263 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 421 450 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 201 230 IPR002110 GO:0005515
Vian2g01686 522 SMART ANK_2a 301 330 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 388 420 - -
Vian2g01686 522 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 131 IPR000535 -
Vian2g01686 522 SUPERFAMILY PapD-like 2 145 IPR008962 -
Vian2g01686 522 PRINTS Ankyrin repeat signature 268 283 IPR002110 GO:0005515
Vian2g01686 522 PRINTS Ankyrin repeat signature 437 451 IPR002110 GO:0005515
Vian2g01686 522 Gene3D - 135 231 IPR036770 -
Vian2g01686 522 SUPERFAMILY Ankyrin repeat 162 480 IPR036770 -
Vian2g01686 522 PANTHER ANKYRIN REPEAT CONTAINING 238 351 - -
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 421 453 - -
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 267 299 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 168 200 IPR002110 GO:0005515
Vian2g01686 522 Pfam Ankyrin repeats (many copies) 170 211 IPR002110 GO:0005515
Vian2g01686 522 Gene3D Immunoglobulins 1 120 IPR013783 -
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 388 420 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 421 453 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Vian2g01686 522 Gene3D - 232 305 IPR036770 -
Vian2g01686 522 Pfam MSP (Major sperm protein) domain 5 104 IPR000535 -
Vian2g01686 522 Gene3D - 306 355 IPR036770 -
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 301 332 - -
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 267 298 - -
Vian2g01686 522 Pfam Ankyrin repeats (3 copies) 361 451 IPR002110 GO:0005515
Vian2g01686 522 Pfam Ankyrin repeats (3 copies) 239 332 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat profile. 301 333 IPR002110 GO:0005515
Vian2g01686 522 ProSiteProfiles Ankyrin repeat region circular profile. 168 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01686 Vian-Chr2 34573263 34574831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01686 238 476 Miscellaneous Gene Families AT2G31820 31.076 1.21e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01686 - - gmx:100782232 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01686 2 34573263 34574831 Vian8g00513 8 8691830 8693528 PCT