Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01663 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAGTCACCAGAGGAGGAAAGTTGAAAGGGCGAAGCAGAAGCAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCGGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAAACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCAAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTTAACAACAAAAAAGGGATAAAGAAACAGGAAGATGCTAATGTTATTGCTAATGCTAATAATGCAGCAGTTCCAAGAGTAAGCAGCACTGGCACTGCTAGTACTACTACCACTACCACTACTACAACTACTACAACTACTACTAGTACTCATTGTAATTCAAACAATGGCAATGGCAACAATGAGAAGTATCTTTCTACCATGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGATTTTGGGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCCATTGCTCAAATATTGGATGTACCAAAGATTGATGATTGTCTCACTGATGCAGCTGACTTGGAGCTTTGTGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCACCTTTATGCTCATTGTTCTGCTAA 870 0.4207 MEIQFQQPNLQHQKSGIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIANANNAAVPRVSSTGTASTTTTTTTTTTTTTTSTHCNSNNGNGNNEKYLSTMTPQSSNLFDDAYKPDLSNCREDFGSGHQSNTSWGFGPVFDRFPIAQILDVPKIDDCLTDAADLELCEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01663 289 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vian2g01663 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 254 - -
Vian2g01663 289 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Vian2g01663 289 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Vian2g01663 289 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vian2g01663 289 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vian2g01663 289 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vian2g01663 289 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vian2g01663 289 MobiDBLite consensus disorder prediction 136 170 - -
Vian2g01663 289 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Vian2g01663 289 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01663 Vian-Chr2 34292217 34293086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01663 10 289 AP2-EREBP Transcription Factor Family AT5G19790 40.345 2.60e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g01663 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01663 K09286 - gmx:100796898 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01663 2 34292217 34293086 Vian2g01663 2 34292217 34293086 ECH