Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01656 ATGGCATCATCATCATTATCATTATCACCACAAAATTTGGAAGAATGTTCTTTTGAAGGTTCTAGTATCTCTGTCCCTTCACAAGATATTCTCCACAAACCAAGTATTGAAGAACAAAAGAATGAAGAACTAAGAACAATGAAGGAGAAGGTTGACAAATCTAAACAAGATCAATCTTCCAATTCAAAATCCCATATGAGATTGGATTATGTTAAACTTTTCGGTAATGAACCAGTTTGTGAGTCAAAGGTGTTTGATTTTTTCAATCTGATGGACACAGGGAACTCATCTTCTTCTAGGGAGAATTACATCAAAAAGAGAGATGAGCACAACAATGAAGTGAAATCATCAAAGACTAAGACTTTTTCTTGCAATTTTTGTAAGAAGGAGTTTTCTTCTTCACAAGCTTTGGGAGGACATCAAAATGCCCATAAGCAAGAACGTGCTCTTGCAAAGGGTAATCAAAGGATTGAAGTTGGTGCTTTTGGACATCTTCATTTTCTCTATTATCCTTATCTCACAAACTCCTTTTATGGATCTTATAGTAGAACACTTGGGGTTCGAATGGAGTCTATGATTCATAAGACTTCTTACCGTTTATCCTCTCTAGGGTTTAGGTTTGATCATCATTCTTCTCTTCATGGATTGAGAAAGAAAGGTTTGAATGAAATTATGAATATGGAAAGTGACGCAACTGTGAGAAAACAAGGTGATAATCTTATTATTAGACAAAACACCCATTTTCTTAGTAAATCTTCTGCAGAGGTTGAAATCAAATCAAACCCAGCTATGTCTCCATTGAATATTGTGCACTTTGATAGTCAATCCAAACAAGAAGGAACCTCTAATCCTAATTCTTCGTATGGGATTGATTTATCACTTAAGCTTTAG 891 0.349 MASSSLSLSPQNLEECSFEGSSISVPSQDILHKPSIEEQKNEELRTMKEKVDKSKQDQSSNSKSHMRLDYVKLFGNEPVCESKVFDFFNLMDTGNSSSSRENYIKKRDEHNNEVKSSKTKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKGNQRIEVGAFGHLHFLYYPYLTNSFYGSYSRTLGVRMESMIHKTSYRLSSLGFRFDHHSSLHGLRKKGLNEIMNMESDATVRKQGDNLIIRQNTHFLSKSSAEVEIKSNPAMSPLNIVHFDSQSKQEGTSNPNSSYGIDLSLKL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01656 296 MobiDBLite consensus disorder prediction 1 63 - -
Vian2g01656 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Vian2g01656 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 296 IPR044246 GO:0009788
Vian2g01656 296 Coils Coil 37 57 - -
Vian2g01656 296 MobiDBLite consensus disorder prediction 1 29 - -
Vian2g01656 296 Coils Coil 100 120 - -
Vian2g01656 296 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Vian2g01656 296 MobiDBLite consensus disorder prediction 33 62 - -
Vian2g01656 296 Gene3D Classic Zinc Finger 96 160 - -
Vian2g01656 296 Pfam C2H2-type zinc finger 122 146 - -
Vian2g01656 296 MobiDBLite consensus disorder prediction 274 296 - -
Vian2g01656 296 SUPERFAMILY beta-beta-alpha zinc fingers 119 149 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01656 Vian-Chr2 34225892 34226782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01656 112 197 C2H2 Transcription Factor Family AT5G10970 53.409 1.52e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01656 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01656 - - vra:106753736 469.929