Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01630 ATGGAGGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCCACTGATGAGGAGATAATTACTCATTATCTCACTGAGAAGGTGAAGGATAGTAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAATAAGTGCGAACCTTGGGATTTGCCCAAGAGAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGAAAGTATCCAACTGGTATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCTAAGGCAGCAAAGGACGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTCTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCGGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCATCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTCCCACAATCAGTTACACCTCCAACCAAGCCAATCTCAGCAACACCGTTAACCCAATTGGAAGCAACGCACTCTCACAACCTTCAAACATGTTCTCTGATTACTACGTGCACCAAAACAGGATCAGAAGTTCCATCATGCCGAGTATTGAAGGCTCAGGTTTCGGTACCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCATTTGGGTGGAATCTTGGAGAAACAGTGCAAGATGGAACAATTCTCCTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACGGAAACATCCTCGGTGGTTTCGAAGCAGGACAACATGGGAAGAAATCGGACATTGTACGAGGATCTTGAAGGTCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCTTGCAGTGGGATGACTACTGA 1182 0.4492 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKDSSFSAIAIGEADLNKCEPWDLPKRAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYEIPTISYTSNQANLSNTVNPIGSNALSQPSNMFSDYYVHQNRIRSSIMPSIEGSGFGTNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDNMGRNRTLYEDLEGPSSVAPLSDLECLQWDDY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01630 393 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Vian2g01630 393 FunFam NAC domain-containing protein 100-like 25 171 - -
Vian2g01630 393 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Vian2g01630 393 MobiDBLite consensus disorder prediction 334 364 - -
Vian2g01630 393 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vian2g01630 393 MobiDBLite consensus disorder prediction 334 365 - -
Vian2g01630 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 283 - -
Vian2g01630 393 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01630 Vian-Chr2 33861193 33862634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01630 1 203 NAC Transcription Factor Family AT5G18270 74.057 4.87e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g01630 NAM 6.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01630 - - aprc:113861501 688.723