Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01626 ATGGGAAGCCCTCAATCCAATTTGCCACCTGGTTTTAGGTTCCACCCAACAGATGAAGAACTCATTCTTCACTACCTTAGTAAAAGGGTTGCATCCATTCCCTTACCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCAAACGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTCACATCATTGCAGGGTGGATCAGTCCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGACGATTGGGTGCTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACTTCAACAGAGGCAGGAATAGGAGTTGGTGAGGTGGATCAAGCAGAGGAGCAGCAATTCAATGAGACCCTTTTGCCAATCTTAAAATCTCCAATACCTCCTCCTCAGAACACATTGATGTCTCAAAAATCTGTCTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTACTCAGCAGTTTCTTATCTGAGAACCATTCCAACCCACCAGGGATCGGATCAAGTGCAGGCTTCAACACTGAGAATTTGGAACAGCAATCTTCTCCGATGAACAACCCCAACAATAGCTACACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAACATGAGGCCAAAGCGCCAATTTTCAAGCATTGATGATGAAACTCTGTACCCATCCAAGAAATACCTGACTTCCTCTTGCAACTTTCCTTCCCACATCAACCCCCAATACGAGAATCCACAATGGAACTACCTCGTCAAACAGTCTTTGCTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1053 0.4568 MGSPQSNLPPGFRFHPTDEELILHYLSKRVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGSVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEAGIGVGEVDQAEEQQFNETLLPILKSPIPPPQNTLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGSSAGFNTENLEQQSSPMNNPNNSYTFQKNTQLNPSLSNMENMRPKRQFSSIDDETLYPSKKYLTSSCNFPSHINPQYENPQWNYLVKQSLLNQRLLLGPQLQFQG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01626 350 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Vian2g01626 350 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Vian2g01626 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 266 - -
Vian2g01626 350 MobiDBLite consensus disorder prediction 244 264 - -
Vian2g01626 350 FunFam NAC transcription factor 56 17 171 - -
Vian2g01626 350 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Vian2g01626 350 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01626 Vian-Chr2 33799876 33801326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01626 4 350 NAC Transcription Factor Family AT3G04070 51.667 1.35e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g01626 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01626 - - vun:114194335 689.878