Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01620 ATGGTTGGTGCCATAAAAGCTGCGATTGGAGACGGGGTGTTGACTTTCATGTGGGTGTTTTGTTCTTCTCTGTTGGGGATTGCTTCTGGGTACGTAACTAAAGCCCTTAACCTTCAAGACATCTCCTACAACGGGTTCCCTTACCCTTCTCTCATTGTCACCATTACCCTCGTTTTTGTACTTGTTTTCCTTTTCACCCTCATCGGCAATGCCCTCGGTGGCGCCAGCTTCAACCCCACCGGCACCGCTTCCTTTTACGCCGTTGGTCTCGGCTCTGATACGCTCCTCTCAATGGCGCTTCGTTTCCCTGCCCAGGCAGTTGGTGCTGCTGGTGGTGCAATGGCAATTATGGAAGTGGTTCCTCAAAAGTATAGGCATATGATTGGAGGTCCTTCTCTGAAAGTGGATTTGCATACTGGGGCTGTTGTTGAAGGGGTGTTGACCTTTTTTATTACCTTTATCGTTCTCTTCATCTTCCTCAAGGGCCCTCGTAGTGATTTGTTGAAGATCTGGTTTCTAGCCACAGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGCCCAGCCATGAATCCTGCCAATGCTTTTGGTTGGGCTTACTTAAACAATTGGCACAACACATGGGACCAATTGTATGTATACTGGATTTGCCCCTTTGCCGGAGCAATATTGGCAGCATGGTTGTTCCGTGCAATCTTTCCCCCACCACCACCGCCAGAACTCAAACAAAAGAAAGCATGA 747 0.4859 MVGAIKAAIGDGVLTFMWVFCSSLLGIASGYVTKALNLQDISYNGFPYPSLIVTITLVFVLVFLFTLIGNALGGASFNPTGTASFYAVGLGSDTLLSMALRFPAQAVGAAGGAMAIMEVVPQKYRHMIGGPSLKVDLHTGAVVEGVLTFFITFIVLFIFLKGPRSDLLKIWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAIFPPPPPPELKQKKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01620 248 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 Gene3D Glycerol uptake facilitator protein. 3 239 IPR023271 -
Vian2g01620 248 PANTHER AQUAPORIN SIP1-1 3 247 IPR044222 GO:0015250
Vian2g01620 248 FunFam Aquaporin SIP1-1 2 247 - -
Vian2g01620 248 SUPERFAMILY Aquaporin-like 4 243 IPR023271 -
Vian2g01620 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g01620 248 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01620 Vian-Chr2 33640662 33643551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01620 2 248 Major Intrinsic Protein MIP AT5G18290 52.823 1.20e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01620 K09875 - gmx:100792787 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01620 2 33640662 33643551 Vian2g01620 2 33640662 33643551 ECH