Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01595 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCATACGGCATGGGGCGGGAGATACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCCACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGATCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCCTGGACCCGTTTTCCCTGCTGGGGTTTTCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCGGCCAACGTGGCAGCCTCCCACTTCAGCCAACAACCGTTTTTCGCAAATAATGATAACAATAATTATTACAATAATAAGAATGATAATGAGAACAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGTGATGGAACAGCAGAGTGATGGATTTTATTGGGAGGGTAGTCCAATGTTGGGTGCAATGTCAACAGTGTCAGAGAATGTTAGTGCAGAGTCTGAAGTTTTTGAGTTGGGGAGCTCCTCCTACTTCTTCTTCTGA 696 0.5618 MNPRTTSSSSKTKKKQTAPEPHHTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPIISPDQQPLPQPDPVLTLDPFSLLGFSSGSSSYDENASANVAASHFSQQPFFANNDNNNYYNNKNDNENSGSTVELPPLPPDITSSMGYVMEQQSDGFYWEGSPMLGAMSTVSENVSAESEVFELGSSSYFFF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01595 231 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 157 - -
Vian2g01595 231 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Vian2g01595 231 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 MobiDBLite consensus disorder prediction 154 175 - -
Vian2g01595 231 MobiDBLite consensus disorder prediction 1 29 - -
Vian2g01595 231 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vian2g01595 231 MobiDBLite consensus disorder prediction 154 172 - -
Vian2g01595 231 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Vian2g01595 231 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01595 Vian-Chr2 33112523 33113218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01595 7 213 AP2-EREBP Transcription Factor Family AT5G13910 45.909 2.38e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian2g01595 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01595 K09286 - gmx:100792421 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01595 2 33112523 33113218 Vian2g01595 2 33112523 33113218 ECH
Vian2g01595 2 33112523 33113218 Vian8g00720 8 14074180 14074806 PCT