Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01576 ATGGTCATATTATCAAATCTCAAGGCAAACATCACTACAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAATAGGGAAGGTTTCAACTTCCCTAGCCAACAAGGGGAAGAAGCTTCTTCATTCCCCTTTCTTCAACAACCAATCAATACTGCTGATGATGGCACCCCTTCCACACCAGTTCCACAATATGCCCAAATACCCACTTCTACCTTGATTGAGACACAGGACCCATCTCAGCACCCTTTAAATCAAGGTTGGTGTCTATCTTGTTATAATGATGTTGATTGTGGGGACAAGAAGTTAGGGAGAAAAAGACACTATCGTGGAGTTCGACAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGTGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACTTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTTAAAGGATCCAAAGCAAAGCTCAATTTCCCAGAACACGTTCTTCTTGCTTCAATACCACCTTCACCTTCTACTCAAAACATAAACATTAACACCAATAACAGTTATGCTTCTTTTTCTTCACCTCTTACACCAACACCTTCACCACCAGTTTATCAGCCACAACCCTTGTTATCACCATCACAGGAAGAAGCGTTTCCAAATCTAATGCAGTACGCACAGCTTCTTTGGAGTAGAGATGATGATGATCTACAACGTGTTGCTTCAGGCCTTCACCATCATCATAATCCCACTGAGTCTTTCCATGGTTCCAGTTCTTCAACTATGTTCTCTTTCTCGTCCACTTCTGTTGTGACCGAGTCTGATCAACAGATTGGAGGTGACGCCGGTGACTCCAAGGAGGGAGAGTATTATGGTTCTTGCTTTTCTAGAGGGACTGATTTTCACGGCAAGAATTGA 966 0.4462 MVILSNLKANITTEEPFIELNKVDRRHGKRPLPSDHASRENREGFNFPSQQGEEASSFPFLQQPINTADDGTPSTPVPQYAQIPTSTLIETQDPSQHPLNQGWCLSCYNDVDCGDKKLGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLASIPPSPSTQNININTNNSYASFSSPLTPTPSPPVYQPQPLLSPSQEEAFPNLMQYAQLLWSRDDDDLQRVASGLHHHHNPTESFHGSSSSTMFSFSSTSVVTESDQQIGGDAGDSKEGEYYGSCFSRGTDFHGKN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01576 321 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 MobiDBLite consensus disorder prediction 284 321 - -
Vian2g01576 321 MobiDBLite consensus disorder prediction 24 42 - -
Vian2g01576 321 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Vian2g01576 321 PANTHER DNA-BINDING DOMAIN 82 255 IPR044808 GO:0003700|GO:0009873
Vian2g01576 321 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Vian2g01576 321 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Vian2g01576 321 MobiDBLite consensus disorder prediction 24 56 - -
Vian2g01576 321 FunFam Ethylene-responsive transcription factor 2 122 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01576 Vian-Chr2 32720344 32722905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01576 65 187 AP2-EREBP Transcription Factor Family AT5G61890 60.000 1.65e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g01576 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01576 - - var:108318772 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01576 2 32720344 32722905 Vian2g01576 2 32720344 32722905 ECH
Vian1g03749 1 60361779 60365122 Vian2g01576 2 32720344 32722905 ECH
Vian2g01576 2 32720344 32722905 Vian8g00704 8 13797086 13798709 PCT