Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01574 ATGGTTTCCACCAGAGCCGAGAAGAGTGTAAAATCAAATTCTCCTGTCATGAATGGCGTTAAAGAAACTAAATCAAATTCCCCTGTTAGGAATGGCGTTAAAGAAGATAAGGATTTAAAGAAATTGAAAGGATCGAAGGCTTCTCCAACAGCGCCGCGGAGATCGAGCGCTCGAATTCAAGCTCTGCAGAAAGCCGAGAAGTCACTAGCCGTACCAAATGCAGTGGTAGTTAAAGAGGAGGACAAAGACAATGTTAAAGAAGGGAAGGGTAAGAAGCGCAGTAGAAAGAGTGGCCCTGAGGAGAGTTTGGTGGTGGAAGAACAGTCTGTTTTACTGTTGAAGAAAAAACCATTCACTTGTGACAAGGATGAGATGAAAGTAGAGAATGCGGTTGGACAGCTTGGAGATAAGAGTGATACAGTTAAAGTTAAAGATACCATACGTTTATTCAATAAACATTATCTGCAATTTGTTCAGGAAGAAGAAAAAAGGTGTATAAGGGCTGAGACTCAGCCTAAGGATGCTAACTCTCCTAAGAAGTCTTCTCAGAAGGCTTCAAAATCAAAGATGATGGAAAATAATGAAATACTGTACTCTGAGAAAAAAATTGGCAGCATTCCAGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGTCACTGGTTAAATGGCATTGATTATATGGGCCAGTCTTATGCCAAAGCGTATAGCTTTGAATTTCCAATTGCTATTGCAATTGTTTTGTCGGGCATGTATGAGGATGACCAGGACAATGCTGAAGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTTACTGGTGATAAGCGTCAAATTCAGGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGTGGAGCAATGTGTGCCTGTTAGAGTGATTCGAGGTCATGATTCTTCAAGCAGTTACTCTGGGAAAGTATACACTTATGATGGCTTGTACAAGGTTGTCAATTATTGGTGTGAGACAGGGATATCTGGATTTAAAGTCTTTAAGTTTCGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACAAATCAGGTTTATTTTACTCATGGACGTGTTCCTCAATCTATAGCAGAAATAAGAGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATACCCATTCCAGCTACAAATGTGGTAGCAAAAAATGTGAAGCTTCCAACTAATGCCGCTGGATGCAAATGCAAAGGCTCCTGTAATGACCCAACAACATGTGCATGTGCTCTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTCAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAGGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACGGAAGACATGGATAGCATGTTGGAAAACAATTATATTTTTGAGATAGATGGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGAAATTCCTGAAGATATATTGAACAAATATGATGATCTAAGTTCCGAAAGTGTGCCAGAGTTTTGCATTGATGCTGGATCTACTGGAAATATTGCTAGATTTATAAACCATTGTTGTGAGCCTAATCTGTTCGTGCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTAATGCTGTTTGCTGCGGACAACATACCTCCTTTGCAGGAATTAACGTATGACTATGGTTACGCTCTAGATAGCGTGTTGGGCTCCGATGGGAAGATCAAGCAAATGACATGCTATTGTGGGGCCGCCGACTGCAGGAAGCGATTATTCTAA 1983 0.4201 MVSTRAEKSVKSNSPVMNGVKETKSNSPVRNGVKEDKDLKKLKGSKASPTAPRRSSARIQALQKAEKSLAVPNAVVVKEEDKDNVKEGKGKKRSRKSGPEESLVVEEQSVLLLKKKPFTCDKDEMKVENAVGQLGDKSDTVKVKDTIRLFNKHYLQFVQEEEKRCIRAETQPKDANSPKKSSQKASKSKMMENNEILYSEKKIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYSFEFPIAIAIVLSGMYEDDQDNAEDVVYTGQGGHNLTGDKRQIQDQKLERGNLALKNCVEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVNYWCETGISGFKVFKFRLRRLEGQPTLTTNQVYFTHGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVAKNVKLPTNAAGCKCKGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSMLENNYIFEIDGLQTIKGLGGRERRSQDGEIPEDILNKYDDLSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLGSDGKIKQMTCYCGAADCRKRLF 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01574 660 SMART preset_2 387 465 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian2g01574 660 SUPERFAMILY PUA domain-like 189 378 IPR015947 -
Vian2g01574 660 Pfam Pre-SET motif 412 473 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian2g01574 660 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 25 653 - -
Vian2g01574 660 ProSiteProfiles YDG domain profile. 204 356 IPR003105 -
Vian2g01574 660 SUPERFAMILY SET domain 383 636 IPR046341 -
Vian2g01574 660 Pfam SET domain 492 630 IPR001214 GO:0005515
Vian2g01574 660 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 42 660 IPR025794 GO:0016571
Vian2g01574 660 Gene3D SET domain 382 660 IPR046341 -
Vian2g01574 660 MobiDBLite consensus disorder prediction 28 44 - -
Vian2g01574 660 MobiDBLite consensus disorder prediction 76 102 - -
Vian2g01574 660 MobiDBLite consensus disorder prediction 175 191 - -
Vian2g01574 660 MobiDBLite consensus disorder prediction 1 27 - -
Vian2g01574 660 ProSiteProfiles Post-SET domain profile. 644 660 IPR003616 -
Vian2g01574 660 MobiDBLite consensus disorder prediction 1 105 - -
Vian2g01574 660 SMART set_7 481 636 IPR001214 GO:0005515
Vian2g01574 660 ProSiteProfiles SET domain profile. 481 630 IPR001214 GO:0005515
Vian2g01574 660 SMART G9a_1 199 360 IPR003105 -
Vian2g01574 660 MobiDBLite consensus disorder prediction 168 191 - -
Vian2g01574 660 Pfam SAD/SRA domain 203 360 IPR003105 -
Vian2g01574 660 Gene3D - 185 373 IPR036987 -
Vian2g01574 660 ProSiteProfiles Pre-SET domain profile. 416 478 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01574 Vian-Chr2 32679861 32696910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01574 190 660 EF-hand Containing Proteins AT5G13960 63.692 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian2g01574 SAD_SRA 5.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01574 K11420 - gmx:100796701 967.222