Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01566 ATGGCTAGTTTTGAGGAAAAGGGATTTTGTGCAGTACAGGGGTATTGTGATATTCCCATTTTTGTTGAGGGTTTGTGGCTTCTGTGTGACAATGGGGCGGTGTCTTGCATTCTTGCAATGTGCGAACGGGAAAAGTTAGGAAGTGCTGCACAGAGTTGGCTTATTGACTTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAAGGAGTTCATCTCAACTCTGGAAGGAGACCAAGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGTAGTTATTTCCATATCTTTCACAAGACAATCAATGCTTATGCAACTAGTCAAAGAAAGCGTAGAAAGATTCATCATCCACAGGGTTTGAGTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATGCAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGCAAAAGCAAACTGAGAAAAATGAGGACAATCCAATGGTTGAAGATCTTGACAATATAGTGTCAAGAACAAGTCCCAGGACTCCAAAACCAAATCCTCCCCATCCACCTCGTGCAGGAAACTCTGTTGATTGTGATGATTGTATCGATGAAACTGTACCTCTGCCTTTTGTCCAGGACCTAGACAATTCTGCATGCTTACCTGGCGAATTACAAGCTGAGAAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGATTCTTCTGATCTGTTAAATGATTATGGATTGGACTCCAGCAATCTCTGTGACTTAGAATTCTATGATAATCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTGGCATCAAGCTTAGGTTTTCGTCATGTGAAGAAGCTTTTGTCCTTAGCTGGACTTGTGGCCTTCACGTGGGGGTTATTTGTGATCTTGTTTTGAGGCATATTTGTTTCGTCTATGGCCTATTTTATACTATTGCTTTGACTCTTTATGTTAGCCATGGAAGCGATGAATACATCTTTTTCGGCTAG 1329 0.4056 MASFEEKGFCAVQGYCDIPIFVEGLWLLCDNGAVSCILAMCEREKLGSAAQSWLIDFGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFIKEFISTLEGDQGICYTHPENLPGAKKDGSYFHIFHKTINAYATSQRKRRKIHHPQGLSEEHWHWHKTGRTKAIMQNGMCKGFKKIMVLHVRSKSGSKPFKSNWQKQTEKNEDNPMVEDLDNIVSRTSPRTPKPNPPHPPRAGNSVDCDDCIDETVPLPFVQDLDNSACLPGELQAEKHTEYDGLDDILLCKEILDSSDLLNDYGLDSSNLCDLEFYDNQIARNDNESCGISVLDTLELDTPDFDHSGIKLRFSSCEEAFVLSWTCGLHVGVICDLVLRHICFVYGLFYTIALTLYVSHGSDEYIFFG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01566 442 Pfam No apical meristem (NAM) protein 104 238 IPR003441 GO:0003677|GO:0006355
Vian2g01566 442 Gene3D NAC domain 112 249 IPR036093 GO:0003677|GO:0006355
Vian2g01566 442 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 51 238 IPR044799 GO:0003700
Vian2g01566 442 ProSiteProfiles NAC domain profile. 103 264 IPR003441 GO:0003677|GO:0006355
Vian2g01566 442 MobiDBLite consensus disorder prediction 228 280 - -
Vian2g01566 442 SUPERFAMILY NAC domain 88 238 IPR036093 GO:0003677|GO:0006355
Vian2g01566 442 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01566 Vian-Chr2 32507866 32514535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01566 81 238 NAC Transcription Factor Family AT4G28500 44.375 2.09e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g01566 NAM 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01566 - - gmx:100780442 507.294